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      "donAcc_type": "standard",
      "distance": 3.228,
      "atom1_id": "///K/826/N",
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      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3930,
      "atom1_serNum": 43194,
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      "donAcc_type": "standard",
      "distance": 3.327,
      "atom1_id": "///K/826/NZ",
      "atom2_id": "///K/848/O",
      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3931,
      "atom1_serNum": 43209,
      "atom2_serNum": 43211,
      "donAcc_type": "acceptable",
      "distance": 2.909,
      "atom1_id": "///K/828/O",
      "atom2_id": "///K/828/OG",
      "atom_pair": "O:O",
      "residue_pair": "aa:aa"
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      "donAcc_type": "standard",
      "distance": 3.116,
      "atom1_id": "///K/848/O",
      "atom2_id": "///K/850/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3933,
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      "donAcc_type": "standard",
      "distance": 3.221,
      "atom1_id": "///K/850/O",
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      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
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      "donAcc_type": "standard",
      "distance": 2.740,
      "atom1_id": "///K/852/N",
      "atom2_id": "///K/855/O",
      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3935,
      "atom1_serNum": 43326,
      "atom2_serNum": 43351,
      "donAcc_type": "standard",
      "distance": 2.836,
      "atom1_id": "///K/857/OD2",
      "atom2_id": "///K/860/NE1",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
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      "donAcc_type": "standard",
      "distance": 3.479,
      "atom1_id": "///K/860/N",
      "atom2_id": "///K/863/OE1",
      "atom_pair": "N:O",
      "residue_pair": "aa:aa"
    },
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      "atom1_serNum": 43346,
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      "donAcc_type": "standard",
      "distance": 2.867,
      "atom1_id": "///K/860/O",
      "atom2_id": "///K/864/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
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      "donAcc_type": "standard",
      "distance": 2.901,
      "atom1_id": "///K/861/O",
      "atom2_id": "///K/865/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3939,
      "atom1_serNum": 43366,
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      "donAcc_type": "standard",
      "distance": 3.018,
      "atom1_id": "///K/862/O",
      "atom2_id": "///K/866/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3940,
      "atom1_serNum": 43368,
      "atom2_serNum": 43463,
      "donAcc_type": "acceptable",
      "distance": 3.223,
      "atom1_id": "///K/862/OG1",
      "atom2_id": "///K/873/NE2",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3941,
      "atom1_serNum": 43373,
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      "donAcc_type": "standard",
      "distance": 2.892,
      "atom1_id": "///K/863/O",
      "atom2_id": "///K/867/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
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      "atom1_serNum": 43382,
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      "donAcc_type": "standard",
      "distance": 2.967,
      "atom1_id": "///K/864/O",
      "atom2_id": "///K/868/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3943,
      "atom1_serNum": 43390,
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      "donAcc_type": "standard",
      "distance": 2.714,
      "atom1_id": "///K/865/O",
      "atom2_id": "///K/870/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3944,
      "atom1_serNum": 43394,
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      "donAcc_type": "questionable",
      "distance": 3.234,
      "atom1_id": "///K/865/OE1",
      "atom2_id": "///K/871/O",
      "atom_pair": "O:O",
      "residue_pair": "aa:aa"
    },
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      "index": 3945,
      "atom1_serNum": 43394,
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      "donAcc_type": "standard",
      "distance": 2.788,
      "atom1_id": "///K/865/OE1",
      "atom2_id": "///K/873/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3946,
      "atom1_serNum": 43394,
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      "donAcc_type": "standard",
      "distance": 2.969,
      "atom1_id": "///K/865/OE1",
      "atom2_id": "///K/874/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3947,
      "atom1_serNum": 43395,
      "atom2_serNum": 43476,
      "donAcc_type": "standard",
      "distance": 3.109,
      "atom1_id": "///K/865/OE2",
      "atom2_id": "///K/875/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3948,
      "atom1_serNum": 43395,
      "atom2_serNum": 43560,
      "donAcc_type": "standard",
      "distance": 3.608,
      "atom1_id": "///K/865/OE2",
      "atom2_id": "///K/885/NH2",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3949,
      "atom1_serNum": 43417,
      "atom2_serNum": 43638,
      "donAcc_type": "standard",
      "distance": 3.175,
      "atom1_id": "///K/868/O",
      "atom2_id": "///K/895/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3950,
      "atom1_serNum": 43494,
      "atom2_serNum": 43512,
      "donAcc_type": "standard",
      "distance": 3.804,
      "atom1_id": "///K/877/O",
      "atom2_id": "///K/880/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3951,
      "atom1_serNum": 43523,
      "atom2_serNum": 43550,
      "donAcc_type": "standard",
      "distance": 3.040,
      "atom1_id": "///K/881/O",
      "atom2_id": "///K/885/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3952,
      "atom1_serNum": 43529,
      "atom2_serNum": 43561,
      "donAcc_type": "standard",
      "distance": 2.846,
      "atom1_id": "///K/882/O",
      "atom2_id": "///K/886/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3953,
      "atom1_serNum": 43540,
      "atom2_serNum": 43570,
      "donAcc_type": "standard",
      "distance": 2.872,
      "atom1_id": "///K/883/O",
      "atom2_id": "///K/887/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3954,
      "atom1_serNum": 43548,
      "atom2_serNum": 43581,
      "donAcc_type": "standard",
      "distance": 3.204,
      "atom1_id": "///K/884/O",
      "atom2_id": "///K/888/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3955,
      "atom1_serNum": 43553,
      "atom2_serNum": 43589,
      "donAcc_type": "standard",
      "distance": 3.112,
      "atom1_id": "///K/885/O",
      "atom2_id": "///K/889/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3956,
      "atom1_serNum": 43564,
      "atom2_serNum": 43597,
      "donAcc_type": "standard",
      "distance": 2.845,
      "atom1_id": "///K/886/O",
      "atom2_id": "///K/890/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3957,
      "atom1_serNum": 43573,
      "atom2_serNum": 43601,
      "donAcc_type": "standard",
      "distance": 2.807,
      "atom1_id": "///K/887/O",
      "atom2_id": "///K/891/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3958,
      "atom1_serNum": 43592,
      "atom2_serNum": 43617,
      "donAcc_type": "acceptable",
      "distance": 2.688,
      "atom1_id": "///K/889/O",
      "atom2_id": "///K/892/OG",
      "atom_pair": "O:O",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3959,
      "atom1_serNum": 43610,
      "atom2_serNum": 43886,
      "donAcc_type": "standard",
      "distance": 2.613,
      "atom1_id": "///K/891/NH1",
      "atom2_id": "///K/1001/O3'",
      "atom_pair": "N:O",
      "residue_pair": "aa:ligand"
    },
    {
      "index": 3960,
      "atom1_serNum": 43610,
      "atom2_serNum": 43888,
      "donAcc_type": "acceptable",
      "distance": 2.828,
      "atom1_id": "///K/891/NH1",
      "atom2_id": "///K/1001/O2'",
      "atom_pair": "N:O",
      "residue_pair": "aa:ligand"
    },
    {
      "index": 3961,
      "atom1_serNum": 43618,
      "atom2_serNum": 43880,
      "donAcc_type": "standard",
      "distance": 3.276,
      "atom1_id": "///K/893/N",
      "atom2_id": "///K/1001/O",
      "atom_pair": "N:O",
      "residue_pair": "aa:ligand"
    },
    {
      "index": 3962,
      "atom1_serNum": 43635,
      "atom2_serNum": 43659,
      "donAcc_type": "standard",
      "distance": 3.162,
      "atom1_id": "///K/894/O",
      "atom2_id": "///K/898/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3963,
      "atom1_serNum": 43641,
      "atom2_serNum": 43667,
      "donAcc_type": "standard",
      "distance": 2.922,
      "atom1_id": "///K/895/O",
      "atom2_id": "///K/899/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3964,
      "atom1_serNum": 43648,
      "atom2_serNum": 43678,
      "donAcc_type": "standard",
      "distance": 2.948,
      "atom1_id": "///K/896/O",
      "atom2_id": "///K/900/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3965,
      "atom1_serNum": 43655,
      "atom2_serNum": 43688,
      "donAcc_type": "standard",
      "distance": 2.950,
      "atom1_id": "///K/897/O",
      "atom2_id": "///K/901/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3966,
      "atom1_serNum": 43662,
      "atom2_serNum": 43696,
      "donAcc_type": "standard",
      "distance": 2.883,
      "atom1_id": "///K/898/O",
      "atom2_id": "///K/902/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3967,
      "atom1_serNum": 43670,
      "atom2_serNum": 43707,
      "donAcc_type": "standard",
      "distance": 2.961,
      "atom1_id": "///K/899/O",
      "atom2_id": "///K/903/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3968,
      "atom1_serNum": 43699,
      "atom2_serNum": 43719,
      "donAcc_type": "standard",
      "distance": 3.256,
      "atom1_id": "///K/902/O",
      "atom2_id": "///K/905/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3969,
      "atom1_serNum": 43710,
      "atom2_serNum": 43727,
      "donAcc_type": "standard",
      "distance": 3.504,
      "atom1_id": "///K/903/O",
      "atom2_id": "///K/906/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3970,
      "atom1_serNum": 43722,
      "atom2_serNum": 43745,
      "donAcc_type": "standard",
      "distance": 3.489,
      "atom1_id": "///K/905/O",
      "atom2_id": "///K/908/N",
      "atom_pair": "O:N",
      "residue_pair": "aa:aa"
    },
    {
      "index": 3971,
      "atom1_serNum": 43730,
      "atom2_serNum": 43760,
      "donAcc_type": "questionable",
      "distance": 3.172,
      "atom1_id": "///K/906/O",
      "atom2_id": "///K/909/O",
      "atom_pair": "O:O",
      "residue_pair": "aa:aa"
    }
  ],
  "refCoords": {
    "purine": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500  -0.5000   0.4000",
      "    3 N      -2.2500  -0.5000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       1.2500   5.0000   0.4000",
      "    6 C       1.2500  -0.5000   0.4000",
      "    7 C       1.2500  -0.5000  -0.4000",
      "    8 C       1.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500  -0.5000   0.4000",
      "   11 C      -2.2500  -0.5000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ],
    "pyrimidine": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500   1.0000   0.4000",
      "    3 N      -2.2500   1.0000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       1.2500   5.0000   0.4000",
      "    6 C       1.2500   1.0000   0.4000",
      "    7 C       1.2500   1.0000  -0.4000",
      "    8 C       1.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500   1.0000   0.4000",
      "   11 C      -2.2500   1.0000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ],
    "wc_pair": [
      "   12 ATOMS,    12 BONDS",
      "    1 N      -2.2500   5.0000   0.4000",
      "    2 N      -2.2500  -5.0000   0.4000",
      "    3 N      -2.2500  -5.0000  -0.4000",
      "    4 N      -2.2500   5.0000  -0.4000",
      "    5 C       2.2500   5.0000   0.4000",
      "    6 C       2.2500  -5.0000   0.4000",
      "    7 C       2.2500  -5.0000  -0.4000",
      "    8 C       2.2500   5.0000  -0.4000",
      "    9 C      -2.2500   5.0000   0.4000",
      "   10 C      -2.2500  -5.0000   0.4000",
      "   11 C      -2.2500  -5.0000  -0.4000",
      "   12 C      -2.2500   5.0000  -0.4000",
      "    1     1     2",
      "    2     2     3",
      "    3     3     4",
      "    4     4     1",
      "    5     5     6",
      "    6     6     7",
      "    7     7     8",
      "    8     5     8",
      "    9     9     5",
      "   10    10     6",
      "   11    11     7",
      "   12    12     8"
    ]
  },
  "metadata": {
    "license": "http://innovation.columbia.edu/technologies/CU20391",
    "url": "http://x3dna.org/",
    "url_alt": "http://home.x3dna.org/",
    "forum": "http://forum.x3dna.org/",
    "citation": "Lu et al. (2015). 'DSSR: an integrated software tool for dissecting the spatial structure of RNA.' Nucleic Acids Res., 43(21):e142 [doi:10.1093/nar/gkv716].",
    "str_id": "9e00",
    "num_aaChains": 24,
    "aaChains": "A=96,B=80,C=102,D=93,E=97,F=78,G=98,H=92,K=288,L=348,M=99,N=78,O=98,P=91,Q=95,R=79,S=98,T=92,U=291,V=349,W=291,X=184,Y=425,Z=182",
    "num_naChains": 2,
    "naChains": "I=321,J=321",
    "num_atoms": 43873,
    "num_waters": 0,
    "num_metals": 9,
    "metals_desc": "Zn=9",
    "num_notes": 52,
    "notes": [
      {
        "Aminors": "A-minor interactions (including types I and II)"
      },
      {
        "Cstem_index": "stem index of the 'Canonical' helix in k-turn"
      },
      {
        "Cstem_pair": "Cstem bp delineating the k-turn internal loop"
      },
      {
        "Dp": "perpendicular distance of the 3' P atom to the glycosidic bond"
      },
      {
        "GA_pair": "sheared G-A pair in k-turn"
      },
      {
        "HtypePknot": "H-type pseudoknot"
      },
      {
        "Kturn": "kink-turn (k-turn)"
      },
      {
        "LW": "Leontis-Westhof"
      },
      {
        "NCstem_index": "stem index of the 'Non-Canonical' helix in k-turn"
      },
      {
        "NCstem_pair": "NCstem bp delineating the k-turn internal loop"
      },
      {
        "Uturn": "U-turn of the UNR- or GNRA-type"
      },
      {
        "aa": "amino acid"
      },
      {
        "atom_pair": "symbols of the two atoms involved in an H-bond"
      },
      {
        "auxfiles": "auxiliary files"
      },
      {
        "glyco_bond": "conformation of base related to sugar (syn or anti)"
      },
      {
        "bb_type": "backbone conformation, BI or BII"
      },
      {
        "bending_angle": "angle between two helical axes"
      },
      {
        "bp": "base pair"
      },
      {
        "bseq": "base sequence in one-letter code"
      },
      {
        "bulge": "bulge loop"
      },
      {
        "coaxStacks": "coaxial stacking of stems within a helix"
      },
      {
        "dbn": "dot bracket notation"
      },
      {
        "desc": "description"
      },
      {
        "donAcc_type": "donor/acceptor type of the atom pair in an H-bond"
      },
      {
        "epsilon_zeta": "difference between epsilon and zeta torsion angles"
      },
      {
        "hairpin": "hairpin loop"
      },
      {
        "hbond": "hydrogen bond (H-bond)"
      },
      {
        "helix": "defined by base-stacking interactions, regardless of bp type and backbone connectivity"
      },
      {
        "id": "identifier"
      },
      {
        "iloop": "internal loop"
      },
      {
        "index": "serial number"
      },
      {
        "isoCanonPairs": "isolated canonical pairs"
      },
      {
        "junction": "(multi-branched) junction loop"
      },
      {
        "kissingLoop": "kissing loop"
      },
      {
        "multiplet": "3+ bases in a coplanar geometry"
      },
      {
        "na": "nucleic acid"
      },
      {
        "nonPair": "two nts not forming a pair, but with H-bonding/stacking interactions"
      },
      {
        "nonStack": "nucleotide not involved in stacking interactions"
      },
      {
        "nt": "nucleotide"
      },
      {
        "num": "number"
      },
      {
        "oArea": "overlap areas between two bases, including exocyclic atoms"
      },
      {
        "oArea_ring": "overlap areas between two bases, including only ring atoms"
      },
      {
        "phosContacts": "H-bonding and atom-capping interactions involving a phosphate"
      },
      {
        "residue_pair": "types of the two residues involved in an H-bond"
      },
      {
        "rmsd": "root-mean-squares deviation"
      },
      {
        "serNum": "serial number"
      },
      {
        "ssSegments": "single-stranded segments not involved in loops"
      },
      {
        "ssZp": "Z-coordinate of the 3' phosphorus atom with reference to the 5' base plane"
      },
      {
        "sstr": "secondary structure in dbn"
      },
      {
        "stem": "helix consisting of only canonical pairs, with a continuous backbone"
      },
      {
        "str_id": "structure identifier, derived from inpfile with extension removed"
      },
      {
        "vert_dist": "vertical distance from an atom to a base plane"
      }
    ],
    "num_auxfiles": 12,
    "auxfiles": [
      {
        "index": 1,
        "name": "dssr-pairs.pdb",
        "desc": "an ensemble of base pairs"
      },
      {
        "index": 2,
        "name": "dssr-stems.pdb",
        "desc": "an ensemble of stems"
      },
      {
        "index": 3,
        "name": "dssr-helices.pdb",
        "desc": "an ensemble of helices (coaxial stacking)"
      },
      {
        "index": 4,
        "name": "dssr-2ndstrs.bpseq",
        "desc": "secondary structure in bpseq format"
      },
      {
        "index": 5,
        "name": "dssr-2ndstrs.ct",
        "desc": "secondary structure in connectivity table format"
      },
      {
        "index": 6,
        "name": "dssr-2ndstrs.dbn",
        "desc": "secondary structure in dot-bracket notation"
      },
      {
        "index": 7,
        "name": "dssr-torsions.txt",
        "desc": "backbone torsion angles and suite names"
      },
      {
        "index": 8,
        "name": "dssr-stacks.pdb",
        "desc": "an ensemble of base stacks"
      },
      {
        "index": 9,
        "name": "dssr-rotmat.txt",
        "desc": "position vector and rotation matrix"
      },
      {
        "index": 10,
        "name": "dssr-viewV.pdb",
        "desc": "vertical view of the principal moment of inertia"
      },
      {
        "index": 11,
        "name": "dssr-viewH.pdb",
        "desc": "horizontal view of the principal moment of inertia"
      },
      {
        "index": 12,
        "name": "dssr-viewT.pdb",
        "desc": "top view of the principal moment of inertia"
      }
    ],
    "time_used": "999"
  }
}