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"///b/2882", "vert_dist": 3.165 }, { "index": 213, "type": "sugar", "atom": "///b/2892/O4'", "nt": "///b/2893", "vert_dist": 2.918 }, { "index": 214, "type": "sugar", "atom": "///v/17/O2'", "nt": "///v/18", "vert_dist": 3.004 }, { "index": 215, "type": "phosphate", "atom": "///v/35/OP2", "nt": "///v/33", "vert_dist": 3.209 }, { "index": 216, "type": "phosphate", "atom": "///v/47/OP2", "nt": "///v/47", "vert_dist": 2.932 }, { "index": 217, "type": "sugar", "atom": "///v/59/O4'", "nt": "///v/48", "vert_dist": 3.328 }, { "index": 218, "type": "phosphate", "atom": "///v/57/OP2", "nt": "///v/55", "vert_dist": 3.043 }, { "index": 219, "type": "sugar", "atom": "///b/2450/O4'", "nt": "///v/76", "vert_dist": 3.362 } ], "num_hairpins": 77, "hairpins": [ { "index": 1, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ -1 ], "summary": "[1] 5 [a.38 a.44] 1", "num_nts": 7, "nts_short": "CAUGCCG", "nts_long": "///a/38,///a/39,///a/40,///a/41,///a/42,///a/43,///a/44", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "AUGCC", "nts_long": "///a/39,///a/40,///a/41,///a/42,///a/43" } ] }, { "index": 2, "type": "hairpin loop", "bridging_nts": [ 3 ], "stem_indices": [ 7 ], "summary": "[1] 3 [a.86 a.90] 8", "num_nts": 5, "nts_short": "GUCUC", "nts_long": "///a/86,///a/87,///a/88,///a/89,///a/90", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UCU", "nts_long": "///a/87,///a/88,///a/89" } ] }, { "index": 3, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 16 ], "summary": "[1] 8 [b.59 b.68] 3", "num_nts": 10, "nts_short": "UGCUAAUCUG", "nts_long": "///b/59,///b/60,///b/61,///b/62,///b/63,///b/64,///b/65,///b/66,///b/67,///b/68", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "GCUAAUCU", "nts_long": "///b/60,///b/61,///b/62,///b/63,///b/64,///b/65,///b/66,///b/67" } ] }, { "index": 4, "type": "hairpin loop", "bridging_nts": [ 21 ], "stem_indices": [ 17 ], "summary": "[1] 21 [b.66 b.88] 2", "num_nts": 23, "nts_short": "CUGCGAUAAGCGUCGGUAAGGUG", "nts_long": "///b/66,///b/67,///b/68,///b/69,///b/70,///b/71,///b/72,///b/73,///b/74,///b/75,///b/76,///b/77,///b/78,///b/79,///b/80,///b/81,///b/82,///b/83,///b/84,///b/85,///b/86,///b/87,///b/88", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 21, "nts_short": "UGCGAUAAGCGUCGGUAAGGU", "nts_long": "///b/67,///b/68,///b/69,///b/70,///b/71,///b/72,///b/73,///b/74,///b/75,///b/76,///b/77,///b/78,///b/79,///b/80,///b/81,///b/82,///b/83,///b/84,///b/85,///b/86,///b/87" } ] }, { "index": 5, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 19 ], "summary": "[1] 7 [b.87 b.95] 3", "num_nts": 9, "nts_short": "UGAUAUGAA", "nts_long": "///b/87,///b/88,///b/89,///b/90,///b/91,///b/92,///b/93,///b/94,///b/95", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "GAUAUGA", "nts_long": "///b/88,///b/89,///b/90,///b/91,///b/92,///b/93,///b/94" } ] }, { "index": 6, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 20 ], "summary": "[1] 4 [b.123 b.128] 3", "num_nts": 6, "nts_short": "GGAAAC", "nts_long": "///b/123,///b/124,///b/125,///b/126,///b/127,///b/128", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///b/124,///b/125,///b/126,///b/127" } ] }, { "index": 7, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 21 ], "summary": "[1] 4 [b.137 b.142] 7", "num_nts": 6, "nts_short": "UUUCGA", "nts_long": "///b/137,///b/138,///b/139,///b/140,///b/141,///b/142", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "UUCG", "nts_long": "///b/138,///b/139,///b/140,///b/141" } ] }, { "index": 8, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 22 ], "summary": "[1] 9 [b.158 b.168] 9", "num_nts": 11, "nts_short": "UGAAUCCAUAG", "nts_long": "///b/158,///b/159,///b/160,///b/161,///b/162,///b/163,///b/164,///b/165,///b/166,///b/167,///b/168", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "GAAUCCAUA", "nts_long": "///b/159,///b/160,///b/161,///b/162,///b/163,///b/164,///b/165,///b/166,///b/167" } ] }, { "index": 9, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ -5 ], "summary": "[1] 6 [b.194 b.201] 1", "num_nts": 8, "nts_short": "GAAACAUC", "nts_long": "///b/194,///b/195,///b/196,///b/197,///b/198,///b/199,///b/200,///b/201", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "AAACAU", "nts_long": "///b/195,///b/196,///b/197,///b/198,///b/199,///b/200" } ] }, { "index": 10, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 24 ], "summary": "[1] 4 [b.225 b.230] 2", "num_nts": 6, "nts_short": "CAACCG", "nts_long": "///b/225,///b/226,///b/227,///b/228,///b/229,///b/230", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AACC", "nts_long": "///b/226,///b/227,///b/228,///b/229" } ] }, { "index": 11, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 26 ], "summary": "[1] 5 [b.246 b.252] 2", "num_nts": 7, "nts_short": "CGGCGAG", "nts_long": "///b/246,///b/247,///b/248,///b/249,///b/250,///b/251,///b/252", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GGCGA", "nts_long": "///b/247,///b/248,///b/249,///b/250,///b/251" } ] }, { "index": 12, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 31 ], "summary": "[1] 6 [b.305 b.312] 5", "num_nts": 8, "nts_short": "CUGGAAAG", "nts_long": "///b/305,///b/306,///b/307,///b/308,///b/309,///b/310,///b/311,///b/312", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UGGAAA", "nts_long": "///b/306,///b/307,///b/308,///b/309,///b/310,///b/311" } ] }, { "index": 13, "type": "hairpin loop", "bridging_nts": [ 3 ], "stem_indices": [ -8 ], "summary": "[1] 3 [b.319 b.323] 1", "num_nts": 5, "nts_short": "GAUAC", "nts_long": "///b/319,///b/320,///b/321,///b/322,///b/323", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "AUA", "nts_long": "///b/320,///b/321,///b/322" } ] }, { "index": 14, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 33 ], "summary": "[1] 7 [b.327 b.335] 3", "num_nts": 9, "nts_short": "GUGACAGCC", "nts_long": "///b/327,///b/328,///b/329,///b/330,///b/331,///b/332,///b/333,///b/334,///b/335", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "UGACAGC", "nts_long": "///b/328,///b/329,///b/330,///b/331,///b/332,///b/333,///b/334" } ] }, { "index": 15, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 34 ], "summary": "[1] 9 [b.382 b.392] 8", "num_nts": 11, "nts_short": "ACACGUGGUAU", "nts_long": "///b/382,///b/383,///b/384,///b/385,///b/386,///b/387,///b/388,///b/389,///b/390,///b/391,///b/392", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "CACGUGGUA", "nts_long": "///b/383,///b/384,///b/385,///b/386,///b/387,///b/388,///b/389,///b/390,///b/391" } ] }, { "index": 16, "type": "hairpin loop", "bridging_nts": [ 25 ], "stem_indices": [ -9 ], "summary": "[1] 25 [b.385 b.411] 1", "num_nts": 27, "nts_short": "CGUGGUAUCCUGUCUGAAUAUGGGGGG", "nts_long": "///b/385,///b/386,///b/387,///b/388,///b/389,///b/390,///b/391,///b/392,///b/393,///b/394,///b/395,///b/396,///b/397,///b/398,///b/399,///b/400,///b/401,///b/402,///b/403,///b/404,///b/405,///b/406,///b/407,///b/408,///b/409,///b/410,///b/411", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 25, "nts_short": "GUGGUAUCCUGUCUGAAUAUGGGGG", "nts_long": "///b/386,///b/387,///b/388,///b/389,///b/390,///b/391,///b/392,///b/393,///b/394,///b/395,///b/396,///b/397,///b/398,///b/399,///b/400,///b/401,///b/402,///b/403,///b/404,///b/405,///b/406,///b/407,///b/408,///b/409,///b/410" } ] }, { "index": 17, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 35 ], "summary": "[1] 6 [b.410 b.417] 5", "num_nts": 8, "nts_short": "GGACCAUC", "nts_long": "///b/410,///b/411,///b/412,///b/413,///b/414,///b/415,///b/416,///b/417", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GACCAU", "nts_long": "///b/411,///b/412,///b/413,///b/414,///b/415,///b/416" } ] }, { "index": 18, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 37 ], "summary": "[1] 4 [b.462 b.467] 2", "num_nts": 6, "nts_short": "CGUGAG", "nts_long": "///b/462,///b/463,///b/464,///b/465,///b/466,///b/467", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GUGA", "nts_long": "///b/463,///b/464,///b/465,///b/466" } ] }, { "index": 19, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 38 ], "summary": "[1] 5 [b.487 b.493] 4", "num_nts": 7, "nts_short": "CGGCGAG", "nts_long": "///b/487,///b/488,///b/489,///b/490,///b/491,///b/492,///b/493", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GGCGA", "nts_long": "///b/488,///b/489,///b/490,///b/491,///b/492" } ] }, { "index": 20, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ -14 ], "summary": "[1] 8 [b.565 b.574] 1", "num_nts": 10, "nts_short": "UUUUGUAUAA", "nts_long": "///b/565,///b/566,///b/567,///b/568,///b/569,///b/570,///b/571,///b/572,///b/573,///b/574", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "UUUGUAUA", "nts_long": "///b/566,///b/567,///b/568,///b/569,///b/570,///b/571,///b/572,///b/573" } ] }, { "index": 21, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 44 ], "summary": "[1] 5 [b.610 b.616] 2", "num_nts": 7, "nts_short": "CGAAUAG", "nts_long": "///b/610,///b/611,///b/612,///b/613,///b/614,///b/615,///b/616", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAAUA", "nts_long": "///b/611,///b/612,///b/613,///b/614,///b/615" } ] }, { "index": 22, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 45 ], "summary": "[1] 4 [b.628 b.633] 2", "num_nts": 6, "nts_short": "GGAAAC", "nts_long": "///b/628,///b/629,///b/630,///b/631,///b/632,///b/633", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///b/629,///b/630,///b/631,///b/632" } ] }, { "index": 23, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 46 ], "summary": "[1] 5 [b.640 b.646] 4", "num_nts": 7, "nts_short": "UUAACUG", "nts_long": "///b/640,///b/641,///b/642,///b/643,///b/644,///b/645,///b/646", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UAACU", "nts_long": "///b/641,///b/642,///b/643,///b/644,///b/645" } ] }, { "index": 24, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 51 ], "summary": "[1] 6 [b.711 b.718] 6", "num_nts": 8, "nts_short": "GGUAACAC", "nts_long": "///b/711,///b/712,///b/713,///b/714,///b/715,///b/716,///b/717,///b/718", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GUAACA", "nts_long": "///b/712,///b/713,///b/714,///b/715,///b/716,///b/717" } ] }, { "index": 25, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 53 ], "summary": "[1] 8 [b.743 b.752] 5", "num_nts": 10, "nts_short": "UGUUGAAAAA", "nts_long": "///b/743,///b/744,///b/745,///b/746,///b/747,///b/748,///b/749,///b/750,///b/751,///b/752", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "GUUGAAAA", "nts_long": "///b/744,///b/745,///b/746,///b/747,///b/748,///b/749,///b/750,///b/751" } ] }, { "index": 26, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 54 ], "summary": "[1] 5 [b.778 b.784] 3", "num_nts": 7, "nts_short": "UGAAAGG", "nts_long": "///b/778,///b/779,///b/780,///b/781,///b/782,///b/783,///b/784", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAAAG", "nts_long": "///b/779,///b/780,///b/781,///b/782,///b/783" } ] }, { "index": 27, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 56 ], "summary": "[1] 4 [b.825 b.830] 5", "num_nts": 6, "nts_short": "UUUAGG", "nts_long": "///b/825,///b/826,///b/827,///b/828,///b/829,///b/830", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "UUAG", "nts_long": "///b/826,///b/827,///b/828,///b/829" } ] }, { "index": 28, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ -23 ], "summary": "[1] 9 [b.882 b.892] 1", "num_nts": 11, "nts_short": "GUCAUCCCGAC", "nts_long": "///b/882,///b/883,///b/884,///b/885,///b/886,///b/887,///b/888,///b/889,///b/890,///b/891,///b/892", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "UCAUCCCGA", "nts_long": "///b/883,///b/884,///b/885,///b/886,///b/887,///b/888,///b/889,///b/890,///b/891" } ] }, { "index": 29, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 64 ], "summary": "[1] 6 [b.954 b.961] 10", "num_nts": 8, "nts_short": "UGCUAACG", "nts_long": "///b/954,///b/955,///b/956,///b/957,///b/958,///b/959,///b/960,///b/961", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GCUAAC", "nts_long": "///b/955,///b/956,///b/957,///b/958,///b/959,///b/960" } ] }, { "index": 30, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 65 ], "summary": "[1] 6 [b.977 b.984] 3", "num_nts": 8, "nts_short": "GAAACAAC", "nts_long": "///b/977,///b/978,///b/979,///b/980,///b/981,///b/982,///b/983,///b/984", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "AAACAA", "nts_long": "///b/978,///b/979,///b/980,///b/981,///b/982,///b/983" } ] }, { "index": 31, "type": "hairpin loop", "bridging_nts": [ 11 ], "stem_indices": [ -29 ], "summary": "[1] 11 [b.1062 b.1074] 1", "num_nts": 13, "nts_short": "GCUUAGAAGCAGC", "nts_long": "///b/1062,///b/1063,///b/1064,///b/1065,///b/1066,///b/1067,///b/1068,///b/1069,///b/1070,///b/1071,///b/1072,///b/1073,///b/1074", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 11, "nts_short": "CUUAGAAGCAG", "nts_long": "///b/1063,///b/1064,///b/1065,///b/1066,///b/1067,///b/1068,///b/1069,///b/1070,///b/1071,///b/1072,///b/1073" } ] }, { "index": 32, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ -31 ], "summary": "[1] 6 [b.1091 b.1098] 1", "num_nts": 8, "nts_short": "CGUAAUAG", "nts_long": "///b/1091,///b/1092,///b/1093,///b/1094,///b/1095,///b/1096,///b/1097,///b/1098", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GUAAUA", "nts_long": "///b/1092,///b/1093,///b/1094,///b/1095,///b/1096,///b/1097" } ] }, { "index": 33, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 74 ], "summary": "[1] 8 [b.1169 b.1178] 7", "num_nts": 10, "nts_short": "CGCUUAUGCG", "nts_long": "///b/1169,///b/1170,///b/1171,///b/1172,///b/1173,///b/1174,///b/1175,///b/1176,///b/1177,///b/1178", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "GCUUAUGC", "nts_long": "///b/1170,///b/1171,///b/1172,///b/1173,///b/1174,///b/1175,///b/1176,///b/1177" } ] }, { "index": 34, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 77 ], "summary": "[1] 4 [b.1221 b.1226] 8", "num_nts": 6, "nts_short": "UGUGAG", "nts_long": "///b/1221,///b/1222,///b/1223,///b/1224,///b/1225,///b/1226", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GUGA", "nts_long": "///b/1222,///b/1223,///b/1224,///b/1225" } ] }, { "index": 35, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 79 ], "summary": "[1] 7 [b.1280 b.1288] 6", "num_nts": 9, "nts_short": "GUGAAAAGC", "nts_long": "///b/1280,///b/1281,///b/1282,///b/1283,///b/1284,///b/1285,///b/1286,///b/1287,///b/1288", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "UGAAAAG", "nts_long": "///b/1281,///b/1282,///b/1283,///b/1284,///b/1285,///b/1286,///b/1287" } ] }, { "index": 36, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 84 ], "summary": "[1] 5 [b.1323 b.1329] 2", "num_nts": 7, "nts_short": "GUUAAUC", "nts_long": "///b/1323,///b/1324,///b/1325,///b/1326,///b/1327,///b/1328,///b/1329", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UUAAU", "nts_long": "///b/1324,///b/1325,///b/1326,///b/1327,///b/1328" } ] }, { "index": 37, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 89 ], "summary": "[1] 4 [b.1362 b.1367] 3", "num_nts": 6, "nts_short": "CGAAAG", "nts_long": "///b/1362,///b/1363,///b/1364,///b/1365,///b/1366,///b/1367", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///b/1363,///b/1364,///b/1365,///b/1366" } ] }, { "index": 38, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 90 ], "summary": "[1] 8 [b.1388 b.1397] 5", "num_nts": 10, "nts_short": "GUUAAUAUUC", "nts_long": "///b/1388,///b/1389,///b/1390,///b/1391,///b/1392,///b/1393,///b/1394,///b/1395,///b/1396,///b/1397", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "UUAAUAUU", "nts_long": "///b/1389,///b/1390,///b/1391,///b/1392,///b/1393,///b/1394,///b/1395,///b/1396" } ] }, { "index": 39, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ -36 ], "summary": "[1] 7 [b.1450 b.1458] 1", "num_nts": 9, "nts_short": "CGACGGUUG", "nts_long": "///b/1450,///b/1451,///b/1452,///b/1453,///b/1454,///b/1455,///b/1456,///b/1457,///b/1458", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "GACGGUU", "nts_long": "///b/1451,///b/1452,///b/1453,///b/1454,///b/1455,///b/1456,///b/1457" } ] }, { "index": 40, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 103 ], "summary": "[1] 5 [b.1491 b.1497] 2", "num_nts": 7, "nts_short": "GCAAAUC", "nts_long": "///b/1491,///b/1492,///b/1493,///b/1494,///b/1495,///b/1496,///b/1497", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "CAAAU", "nts_long": "///b/1492,///b/1493,///b/1494,///b/1495,///b/1496" } ] }, { "index": 41, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 104 ], "summary": "[1] 4 [b.1532 b.1537] 5", "num_nts": 6, "nts_short": "CUACGG", "nts_long": "///b/1532,///b/1533,///b/1534,///b/1535,///b/1536,///b/1537", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "UACG", "nts_long": "///b/1533,///b/1534,///b/1535,///b/1536" } ] }, { "index": 42, "type": "hairpin loop", "bridging_nts": [ 2 ], "stem_indices": [ -39 ], "summary": "[1] 2 [b.1564 b.1567] 1", "num_nts": 4, "nts_short": "CAGG", "nts_long": "///b/1564,///b/1565,///b/1566,///b/1567", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AG", "nts_long": "///b/1565,///b/1566" } ] }, { "index": 43, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 105 ], "summary": "[1] 6 [b.1611 b.1618] 2", "num_nts": 8, "nts_short": "CGACACAG", "nts_long": "///b/1611,///b/1612,///b/1613,///b/1614,///b/1615,///b/1616,///b/1617,///b/1618", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GACACA", "nts_long": "///b/1612,///b/1613,///b/1614,///b/1615,///b/1616,///b/1617" } ] }, { "index": 44, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 106 ], "summary": "[1] 5 [b.1629 b.1635] 4", "num_nts": 7, "nts_short": "AGAGAAU", "nts_long": "///b/1629,///b/1630,///b/1631,///b/1632,///b/1633,///b/1634,///b/1635", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAGAA", "nts_long": "///b/1630,///b/1631,///b/1632,///b/1633,///b/1634" } ] }, { "index": 45, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ -42 ], "summary": "[1] 4 [b.1690 b.1695] 1", "num_nts": 6, "nts_short": "CUUCGG", "nts_long": "///b/1690,///b/1691,///b/1692,///b/1693,///b/1694,///b/1695", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "UUCG", "nts_long": "///b/1691,///b/1692,///b/1693,///b/1694" } ] }, { "index": 46, "type": "hairpin loop", "bridging_nts": [ 2 ], "stem_indices": [ -45 ], "summary": "[1] 2 [b.1727 b.1730] 1", "num_nts": 4, "nts_short": "CUUG", "nts_long": "///b/1727,///b/1728,///b/1729,///b/1730", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UU", "nts_long": "///b/1728,///b/1729" } ] }, { "index": 47, "type": "hairpin loop", "bridging_nts": [ 3 ], "stem_indices": [ -46 ], "summary": "[1] 3 [b.1751 b.1755] 1", "num_nts": 5, "nts_short": "CGAAG", "nts_long": "///b/1751,///b/1752,///b/1753,///b/1754,///b/1755", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/1752,///b/1753,///b/1754" } ] }, { "index": 48, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 116 ], "summary": "[1] 9 [b.1776 b.1786] 2", "num_nts": 11, "nts_short": "UUUAUUAAAAA", "nts_long": "///b/1776,///b/1777,///b/1778,///b/1779,///b/1780,///b/1781,///b/1782,///b/1783,///b/1784,///b/1785,///b/1786", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "UUAUUAAAA", "nts_long": "///b/1777,///b/1778,///b/1779,///b/1780,///b/1781,///b/1782,///b/1783,///b/1784,///b/1785" } ] }, { "index": 49, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 118 ], "summary": "[1] 4 [b.1805 b.1810] 3", "num_nts": 6, "nts_short": "CGAAAG", "nts_long": "///b/1805,///b/1806,///b/1807,///b/1808,///b/1809,///b/1810", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///b/1806,///b/1807,///b/1808,///b/1809" } ] }, { "index": 50, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 125 ], "summary": "[1] 4 [b.1867 b.1872] 2", "num_nts": 6, "nts_short": "CGCAAG", "nts_long": "///b/1867,///b/1868,///b/1869,///b/1870,///b/1871,///b/1872", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GCAA", "nts_long": "///b/1868,///b/1869,///b/1870,///b/1871" } ] }, { "index": 51, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 126 ], "summary": "[1] 9 [b.1909 b.1919] 5", "num_nts": 11, "nts_short": "GUAACUAUAAC", "nts_long": "///b/1909,///b/1910,///b/1911,///b/1912,///b/1913,///b/1914,///b/1915,///b/1916,///b/1917,///b/1918,///b/1919", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "UAACUAUAA", "nts_long": "///b/1910,///b/1911,///b/1912,///b/1913,///b/1914,///b/1915,///b/1916,///b/1917,///b/1918" } ] }, { "index": 52, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 127 ], "summary": "[1] 7 [b.1948 b.1956] 5", "num_nts": 9, "nts_short": "GGUAAGUUC", "nts_long": "///b/1948,///b/1949,///b/1950,///b/1951,///b/1952,///b/1953,///b/1954,///b/1955,///b/1956", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "GUAAGUU", "nts_long": "///b/1949,///b/1950,///b/1951,///b/1952,///b/1953,///b/1954,///b/1955" } ] }, { "index": 53, "type": "hairpin loop", "bridging_nts": [ 13 ], "stem_indices": [ -49 ], "summary": "[1] 13 [b.2019 b.2033] 1", "num_nts": 15, "nts_short": "ACUCGCUGUGAAGAU", "nts_long": "///b/2019,///b/2020,///b/2021,///b/2022,///b/2023,///b/2024,///b/2025,///b/2026,///b/2027,///b/2028,///b/2029,///b/2030,///b/2031,///b/2032,///b/2033", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 13, "nts_short": "CUCGCUGUGAAGA", "nts_long": "///b/2020,///b/2021,///b/2022,///b/2023,///b/2024,///b/2025,///b/2026,///b/2027,///b/2028,///b/2029,///b/2030,///b/2031,///b/2032" } ] }, { "index": 54, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 128 ], "summary": "[1] 8 [b.2026 b.2035] 5", "num_nts": 10, "nts_short": "GUGAAGAUGC", "nts_long": "///b/2026,///b/2027,///b/2028,///b/2029,///b/2030,///b/2031,///b/2032,///b/2033,///b/2034,///b/2035", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "UGAAGAUG", "nts_long": "///b/2027,///b/2028,///b/2029,///b/2030,///b/2031,///b/2032,///b/2033,///b/2034" } ] }, { "index": 55, "type": "hairpin loop", "bridging_nts": [ 55 ], "stem_indices": [ -50 ], "summary": "[1] 55 [b.2120 b.2176] 1", "num_nts": 57, "nts_short": "GUGGGAGGCUUAGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCAC", "nts_long": "///b/2120,///b/2121,///b/2122,///b/2123,///b/2124,///b/2125,///b/2126,///b/2127,///b/2128,///b/2129,///b/2130,///b/2131,///b/2132,///b/2133,///b/2134,///b/2135,///b/2136,///b/2137,///b/2138,///b/2139,///b/2140,///b/2141,///b/2142,///b/2143,///b/2144,///b/2145,///b/2146,///b/2147,///b/2148,///b/2149,///b/2150,///b/2151,///b/2152,///b/2153,///b/2154,///b/2155,///b/2156,///b/2157,///b/2158,///b/2159,///b/2160,///b/2161,///b/2162,///b/2163,///b/2164,///b/2165,///b/2166,///b/2167,///b/2168,///b/2169,///b/2170,///b/2171,///b/2172,///b/2173,///b/2174,///b/2175,///b/2176", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 55, "nts_short": "UGGGAGGCUUAGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCA", "nts_long": "///b/2121,///b/2122,///b/2123,///b/2124,///b/2125,///b/2126,///b/2127,///b/2128,///b/2129,///b/2130,///b/2131,///b/2132,///b/2133,///b/2134,///b/2135,///b/2136,///b/2137,///b/2138,///b/2139,///b/2140,///b/2141,///b/2142,///b/2143,///b/2144,///b/2145,///b/2146,///b/2147,///b/2148,///b/2149,///b/2150,///b/2151,///b/2152,///b/2153,///b/2154,///b/2155,///b/2156,///b/2157,///b/2158,///b/2159,///b/2160,///b/2161,///b/2162,///b/2163,///b/2164,///b/2165,///b/2166,///b/2167,///b/2168,///b/2169,///b/2170,///b/2171,///b/2172,///b/2173,///b/2174,///b/2175" } ] }, { "index": 56, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 140 ], "summary": "[1] 5 [b.2208 b.2214] 6", "num_nts": 7, "nts_short": "GUAAUCC", "nts_long": "///b/2208,///b/2209,///b/2210,///b/2211,///b/2212,///b/2213,///b/2214", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UAAUC", "nts_long": "///b/2209,///b/2210,///b/2211,///b/2212,///b/2213" } ] }, { "index": 57, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 141 ], "summary": "[1] 7 [b.2247 b.2255] 3", "num_nts": 9, "nts_short": "CUGGGGCGG", "nts_long": "///b/2247,///b/2248,///b/2249,///b/2250,///b/2251,///b/2252,///b/2253,///b/2254,///b/2255", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "UGGGGCG", "nts_long": "///b/2248,///b/2249,///b/2250,///b/2251,///b/2252,///b/2253,///b/2254" } ] }, { "index": 58, "type": "hairpin loop", "bridging_nts": [ 19 ], "stem_indices": [ -51 ], "summary": "[1] 19 [b.2254 b.2274] 1", "num_nts": 21, "nts_short": "GGUCUCCUCCUAAAGAGUAAC", "nts_long": "///b/2254,///b/2255,///b/2256,///b/2257,///b/2258,///b/2259,///b/2260,///b/2261,///b/2262,///b/2263,///b/2264,///b/2265,///b/2266,///b/2267,///b/2268,///b/2269,///b/2270,///b/2271,///b/2272,///b/2273,///b/2274", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 19, "nts_short": "GUCUCCUCCUAAAGAGUAA", "nts_long": "///b/2255,///b/2256,///b/2257,///b/2258,///b/2259,///b/2260,///b/2261,///b/2262,///b/2263,///b/2264,///b/2265,///b/2266,///b/2267,///b/2268,///b/2269,///b/2270,///b/2271,///b/2272,///b/2273" } ] }, { "index": 59, "type": "hairpin loop", "bridging_nts": [ 11 ], "stem_indices": [ 143 ], "summary": "[1] 11 [b.2263 b.2275] 6", "num_nts": 13, "nts_short": "CUAAAGAGUAACG", "nts_long": "///b/2263,///b/2264,///b/2265,///b/2266,///b/2267,///b/2268,///b/2269,///b/2270,///b/2271,///b/2272,///b/2273,///b/2274,///b/2275", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 11, "nts_short": "UAAAGAGUAAC", "nts_long": "///b/2264,///b/2265,///b/2266,///b/2267,///b/2268,///b/2269,///b/2270,///b/2271,///b/2272,///b/2273,///b/2274" } ] }, { "index": 60, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 146 ], "summary": "[1] 9 [b.2302 b.2312] 5", "num_nts": 11, "nts_short": "GGUCGGACAUC", "nts_long": "///b/2302,///b/2303,///b/2304,///b/2305,///b/2306,///b/2307,///b/2308,///b/2309,///b/2310,///b/2311,///b/2312", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "GUCGGACAU", "nts_long": "///b/2303,///b/2304,///b/2305,///b/2306,///b/2307,///b/2308,///b/2309,///b/2310,///b/2311" } ] }, { "index": 61, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 147 ], "summary": "[1] 6 [b.2323 b.2330] 2", "num_nts": 8, "nts_short": "UGCAAUGG", "nts_long": "///b/2323,///b/2324,///b/2325,///b/2326,///b/2327,///b/2328,///b/2329,///b/2330", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GCAAUG", "nts_long": "///b/2324,///b/2325,///b/2326,///b/2327,///b/2328,///b/2329" } ] }, { "index": 62, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 150 ], "summary": "[1] 4 [b.2355 b.2360] 4", "num_nts": 6, "nts_short": "UGACGG", "nts_long": "///b/2355,///b/2356,///b/2357,///b/2358,///b/2359,///b/2360", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GACG", "nts_long": "///b/2356,///b/2357,///b/2358,///b/2359" } ] }, { "index": 63, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 151 ], "summary": "[1] 4 [b.2373 b.2378] 3", "num_nts": 6, "nts_short": "CGAAAG", "nts_long": "///b/2373,///b/2374,///b/2375,///b/2376,///b/2377,///b/2378", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///b/2374,///b/2375,///b/2376,///b/2377" } ] }, { "index": 64, "type": "hairpin loop", "bridging_nts": [ 8 ], "stem_indices": [ 153 ], "summary": "[1] 8 [b.2403 b.2412] 2", "num_nts": 10, "nts_short": "UGAAUGGAAG", "nts_long": "///b/2403,///b/2404,///b/2405,///b/2406,///b/2407,///b/2408,///b/2409,///b/2410,///b/2411,///b/2412", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "GAAUGGAA", "nts_long": "///b/2404,///b/2405,///b/2406,///b/2407,///b/2408,///b/2409,///b/2410,///b/2411" } ] }, { "index": 65, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 156 ], "summary": "[1] 7 [b.2470 b.2478] 2", "num_nts": 9, "nts_short": "AGUUCAUAU", "nts_long": "///b/2470,///b/2471,///b/2472,///b/2473,///b/2474,///b/2475,///b/2476,///b/2477,///b/2478", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "GUUCAUA", "nts_long": "///b/2471,///b/2472,///b/2473,///b/2474,///b/2475,///b/2476,///b/2477" } ] }, { "index": 66, "type": "hairpin loop", "bridging_nts": [ 6 ], "stem_indices": [ 161 ], "summary": "[1] 6 [b.2527 b.2534] 6", "num_nts": 8, "nts_short": "UGAAGUAG", "nts_long": "///b/2527,///b/2528,///b/2529,///b/2530,///b/2531,///b/2532,///b/2533,///b/2534", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GAAGUA", "nts_long": "///b/2528,///b/2529,///b/2530,///b/2531,///b/2532,///b/2533" } ] }, { "index": 67, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 162 ], "summary": "[1] 5 [b.2550 b.2556] 2", "num_nts": 7, "nts_short": "CUGUUCG", "nts_long": "///b/2550,///b/2551,///b/2552,///b/2553,///b/2554,///b/2555,///b/2556", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UGUUC", "nts_long": "///b/2551,///b/2552,///b/2553,///b/2554,///b/2555" } ] }, { "index": 68, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 164 ], "summary": "[1] 4 [b.2593 b.2598] 3", "num_nts": 6, "nts_short": "CGUGAG", "nts_long": "///b/2593,///b/2594,///b/2595,///b/2596,///b/2597,///b/2598", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GUGA", "nts_long": "///b/2594,///b/2595,///b/2596,///b/2597" } ] }, { "index": 69, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ -62 ], "summary": "[1] 4 [b.2657 b.2662] 1", "num_nts": 6, "nts_short": "CGAGAG", "nts_long": "///b/2657,///b/2658,///b/2659,///b/2660,///b/2661,///b/2662", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAGA", "nts_long": "///b/2658,///b/2659,///b/2660,///b/2661" } ] }, { "index": 70, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 171 ], "summary": "[1] 4 [b.2700 b.2705] 6", "num_nts": 6, "nts_short": "UGCCAA", "nts_long": "///b/2700,///b/2701,///b/2702,///b/2703,///b/2704,///b/2705", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GCCA", "nts_long": "///b/2701,///b/2702,///b/2703,///b/2704" } ] }, { "index": 71, "type": "hairpin loop", "bridging_nts": [ 13 ], "stem_indices": [ 173 ], "summary": "[1] 13 [b.2744 b.2758] 4", "num_nts": 15, "nts_short": "CUGAAAGCAUCUAAG", "nts_long": "///b/2744,///b/2745,///b/2746,///b/2747,///b/2748,///b/2749,///b/2750,///b/2751,///b/2752,///b/2753,///b/2754,///b/2755,///b/2756,///b/2757,///b/2758", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 13, "nts_short": "UGAAAGCAUCUAA", "nts_long": "///b/2745,///b/2746,///b/2747,///b/2748,///b/2749,///b/2750,///b/2751,///b/2752,///b/2753,///b/2754,///b/2755,///b/2756,///b/2757" } ] }, { "index": 72, "type": "hairpin loop", "bridging_nts": [ 5 ], "stem_indices": [ 174 ], "summary": "[1] 5 [b.2794 b.2800] 5", "num_nts": 7, "nts_short": "CUUUAAG", "nts_long": "///b/2794,///b/2795,///b/2796,///b/2797,///b/2798,///b/2799,///b/2800", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UUUAA", "nts_long": "///b/2795,///b/2796,///b/2797,///b/2798,///b/2799" } ] }, { "index": 73, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 176 ], "summary": "[1] 7 [b.2818 b.2826] 5", "num_nts": 9, "nts_short": "GAAGACGAC", "nts_long": "///b/2818,///b/2819,///b/2820,///b/2821,///b/2822,///b/2823,///b/2824,///b/2825,///b/2826", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "AAGACGA", "nts_long": "///b/2819,///b/2820,///b/2821,///b/2822,///b/2823,///b/2824,///b/2825" } ] }, { "index": 74, "type": "hairpin loop", "bridging_nts": [ 4 ], "stem_indices": [ 180 ], "summary": "[1] 4 [b.2855 b.2860] 5", "num_nts": 6, "nts_short": "AGCGAU", "nts_long": "///b/2855,///b/2856,///b/2857,///b/2858,///b/2859,///b/2860", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GCGA", "nts_long": "///b/2856,///b/2857,///b/2858,///b/2859" } ] }, { "index": 75, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 182 ], "summary": "[1] 9 [v.13 v.22] 3", "num_nts": 11, "nts_short": "CAGCCUGGUAG", "nts_long": "///v/13,///v/14,///v/15,///v/16,///v/17,///v/18,///v/19,///v/20,///v/20,///v/21,///v/22", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "AGCCUGGUA", "nts_long": "///v/14,///v/15,///v/16,///v/17,///v/18,///v/19,///v/20,///v/20,///v/21" } ] }, { "index": 76, "type": "hairpin loop", "bridging_nts": [ 9 ], "stem_indices": [ 183 ], "summary": "[1] 9 [v.30 v.40] 4", "num_nts": 11, "nts_short": "CGUUCGGGACG", "nts_long": "///v/30,///v/31,///v/32,///v/33,///v/34,///v/35,///v/36,///v/37,///v/38,///v/39,///v/40", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 9, "nts_short": "GUUCGGGAC", "nts_long": "///v/31,///v/32,///v/33,///v/34,///v/35,///v/36,///v/37,///v/38,///v/39" } ] }, { "index": 77, "type": "hairpin loop", "bridging_nts": [ 7 ], "stem_indices": [ 184 ], "summary": "[1] 7 [v.53 v.61] 5", "num_nts": 9, "nts_short": "GUUCGAAUC", "nts_long": "///v/53,///v/54,///v/55,///v/56,///v/57,///v/58,///v/59,///v/60,///v/61", "num_stems": 1, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "UUCGAAU", "nts_long": "///v/54,///v/55,///v/56,///v/57,///v/58,///v/59,///v/60" } ] } ], "num_bulges": 41, "bulges": [ { "index": 1, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 2, 3 ], "summary": "[2] 0 1 [a.17 a.67 a.18 a.65] 2 6", "num_nts": 5, "nts_short": "CGUAG", "nts_long": "///a/17,///a/18,///a/65,///a/66,///a/67", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///a/66" } ] }, { "index": 2, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 11, 12 ], "summary": "[2] 0 1 [b.36 b.444 b.37 b.442] 2 7", "num_nts": 5, "nts_short": "GCGAC", "nts_long": "///b/36,///b/37,///b/442,///b/443,///b/444", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/443" } ] }, { "index": 3, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 12, 13 ], "summary": "[2] 0 1 [b.43 b.436 b.44 b.434] 7 2", "num_nts": 5, "nts_short": "GAUCC", "nts_long": "///b/43,///b/44,///b/434,///b/435,///b/436", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///b/435" } ] }, { "index": 4, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ -4, 23 ], "summary": "[2] 0 1 [b.183 b.214 b.184 b.212] 1 5", "num_nts": 5, "nts_short": "CCGAG", "nts_long": "///b/183,///b/184,///b/212,///b/213,///b/214", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/213" } ] }, { "index": 5, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 49, -16 ], "summary": "[2] 0 1 [b.696 b.764 b.697 b.762] 9 1", "num_nts": 5, "nts_short": "GCGAC", "nts_long": "///b/696,///b/697,///b/762,///b/763,///b/764", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/763" } ] }, { "index": 6, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 50, -17 ], "summary": "[2] 0 1 [b.701 b.729 b.702 b.727] 3 1", "num_nts": 5, "nts_short": "UUGGA", "nts_long": "///b/701,///b/702,///b/727,///b/728,///b/729", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///b/728" } ] }, { "index": 7, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 52, 53 ], "summary": "[2] 1 0 [b.737 b.757 b.739 b.756] 3 5", "num_nts": 5, "nts_short": "GACGC", "nts_long": "///b/737,///b/738,///b/739,///b/756,///b/757", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/738" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 8, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ -20, 57 ], "summary": "[2] 0 1 [b.836 b.941 b.837 b.939] 1 7", "num_nts": 5, "nts_short": "CCGAG", "nts_long": "///b/836,///b/837,///b/939,///b/940,///b/941", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/940" } ] }, { "index": 9, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 58, 59 ], "summary": "[2] 0 1 [b.849 b.927 b.850 b.925] 3 6", "num_nts": 5, "nts_short": "UCGAA", "nts_long": "///b/849,///b/850,///b/925,///b/926,///b/927", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/926" } ] }, { "index": 10, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ -21, 60 ], "summary": "[2] 0 1 [b.861 b.914 b.862 b.912] 1 2", "num_nts": 5, "nts_short": "GAUGC", "nts_long": "///b/861,///b/862,///b/912,///b/913,///b/914", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///b/913" } ] }, { "index": 11, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 63, -22 ], "summary": "[2] 0 1 [b.879 b.896 b.880 b.894] 2 1", "num_nts": 5, "nts_short": "GGUAC", "nts_long": "///b/879,///b/880,///b/894,///b/895,///b/896", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/895" } ] }, { "index": 12, "type": "bulge", 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"///b/1350,///b/1351,///b/1352,///b/1378,///b/1379", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///b/1351" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 15, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 97, -36 ], "summary": "[2] 0 1 [b.1449 b.1460 b.1450 b.1458] 6 1", "num_nts": 5, "nts_short": "GCGUC", "nts_long": "///b/1449,///b/1450,///b/1458,///b/1459,///b/1460", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///b/1459" } ] }, { "index": 16, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 102, 103 ], "summary": "[2] 1 0 [b.1488 b.1499 b.1490 b.1498] 8 2", "num_nts": 5, "nts_short": "CAGCG", "nts_long": "///b/1488,///b/1489,///b/1490,///b/1498,///b/1499", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/1489" }, { "index": 2, 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b.2617 b.2051 b.2616] 8 3", "num_nts": 5, "nts_short": "CAAUG", "nts_long": "///b/2049,///b/2050,///b/2051,///b/2616,///b/2617", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2050" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 20, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 132, 133 ], "summary": "[2] 1 0 [b.2066 b.2442 b.2068 b.2441] 4 2", "num_nts": 5, "nts_short": "GUGCC", "nts_long": "///b/2066,///b/2067,///b/2068,///b/2441,///b/2442", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///b/2067" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 21, "type": "bulge", "bridging_nts": [ 1, 0 ], "stem_indices": [ 139, 140 ], "summary": "[2] 1 0 [b.2201 b.2220 b.2203 b.2219] 3 6", "num_nts": 5, "nts_short": "UUGUG", "nts_long": "///b/2201,///b/2202,///b/2203,///b/2219,///b/2220", "num_stems": 2, "bridges": [ { "index": 1, 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"///b/2506,///b/2507,///b/2579,///b/2580,///b/2581", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///b/2580" } ] }, { "index": 27, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 163, 164 ], "summary": "[2] 0 1 [b.2590 b.2602 b.2591 b.2600] 4 3", "num_nts": 5, "nts_short": "CGCAG", "nts_long": "///b/2590,///b/2591,///b/2600,///b/2601,///b/2602", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2601" } ] }, { "index": 28, "type": "bulge", "bridging_nts": [ 0, 1 ], "stem_indices": [ 177, 178 ], "summary": "[2] 0 1 [b.2837 b.2879 b.2838 b.2877] 3 5", "num_nts": 5, "nts_short": "GGUAC", "nts_long": "///b/2837,///b/2838,///b/2877,///b/2878,///b/2879", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2878" } ] }, { "index": 29, "type": "bulge", "bridging_nts": [ 0, 2 ], "stem_indices": [ 4, 5 ], "summary": "[2] 0 2 [a.30 a.54 a.31 a.51] 3 4", "num_nts": 6, "nts_short": "CCGAAG", "nts_long": "///a/30,///a/31,///a/51,///a/52,///a/53,///a/54", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///a/52,///a/53" } ] }, { "index": 30, "type": "bulge", "bridging_nts": [ 2, 0 ], "stem_indices": [ 82, -34 ], "summary": "[2] 2 0 [b.1309 b.1603 b.1312 b.1602] 2 1", "num_nts": 6, "nts_short": "GGUUAC", "nts_long": "///b/1309,///b/1310,///b/1311,///b/1312,///b/1602,///b/1603", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GU", "nts_long": "///b/1310,///b/1311" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 31, "type": "bulge", "bridging_nts": [ 0, 2 ], "stem_indices": [ 101, 102 ], "summary": "[2] 0 2 [b.1480 b.1509 b.1481 b.1506] 4 8", "num_nts": 6, "nts_short": "UGCAAG", "nts_long": "///b/1480,///b/1481,///b/1506,///b/1507,///b/1508,///b/1509", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/1507,///b/1508" } ] }, { "index": 32, "type": "bulge", "bridging_nts": [ 2, 0 ], "stem_indices": [ 109, -40 ], "summary": "[2] 2 0 [b.1665 b.1993 b.1668 b.1992] 2 1", "num_nts": 6, "nts_short": "GGAAUC", "nts_long": "///b/1665,///b/1666,///b/1667,///b/1668,///b/1992,///b/1993", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/1666,///b/1667" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 33, "type": "bulge", "bridging_nts": [ 2, 0 ], "stem_indices": [ 120, 121 ], "summary": "[2] 2 0 [b.1836 b.1902 b.1839 b.1901] 3 2", "num_nts": 6, "nts_short": "CCGGCG", "nts_long": "///b/1836,///b/1837,///b/1838,///b/1839,///b/1901,///b/1902", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CG", "nts_long": "///b/1837,///b/1838" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 34, "type": "bulge", "bridging_nts": [ 0, 2 ], "stem_indices": [ 121, 122 ], "summary": "[2] 0 2 [b.1840 b.1900 b.1841 b.1897] 2 5", "num_nts": 6, "nts_short": "UGUAAA", "nts_long": "///b/1840,///b/1841,///b/1897,///b/1898,///b/1899,///b/1900", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/1898,///b/1899" } ] }, { "index": 35, "type": "bulge", "bridging_nts": [ 2, 0 ], "stem_indices": [ 122, 123 ], "summary": "[2] 2 0 [b.1845 b.1893 b.1848 b.1892] 5 3", "num_nts": 6, "nts_short": "GAAGCC", "nts_long": "///b/1845,///b/1846,///b/1847,///b/1848,///b/1892,///b/1893", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, 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"index": 38, "type": "bulge", "bridging_nts": [ 0, 2 ], "stem_indices": [ -60, 159 ], "summary": "[2] 0 2 [b.2511 b.2573 b.2512 b.2570] 1 5", "num_nts": 6, "nts_short": "CAUACG", "nts_long": "///b/2511,///b/2512,///b/2570,///b/2571,///b/2572,///b/2573", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 2, "nts_short": "AC", "nts_long": "///b/2571,///b/2572" } ] }, { "index": 39, "type": "bulge", "bridging_nts": [ 0, 2 ], "stem_indices": [ 160, 161 ], "summary": "[2] 0 2 [b.2521 b.2542 b.2522 b.2539] 3 6", "num_nts": 6, "nts_short": "UGCAAG", "nts_long": "///b/2521,///b/2522,///b/2539,///b/2540,///b/2541,///b/2542", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/2540,///b/2541" } ] }, { "index": 40, "type": "bulge", "bridging_nts": [ 0, 2 ], "stem_indices": [ 170, 171 ], "summary": "[2] 0 2 [b.2694 b.2713 b.2695 b.2710] 5 6", "num_nts": 6, "nts_short": "UUACUG", "nts_long": "///b/2694,///b/2695,///b/2710,///b/2711,///b/2712,///b/2713", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 2, "nts_short": "CU", "nts_long": "///b/2711,///b/2712" } ] }, { "index": 41, "type": "bulge", "bridging_nts": [ 0, 4 ], "stem_indices": [ 91, 92 ], "summary": "[2] 0 4 [b.1414 b.1586 b.1415 b.1581] 11 2", "num_nts": 8, "nts_short": "UGCAUCAG", "nts_long": "///b/1414,///b/1415,///b/1581,///b/1582,///b/1583,///b/1584,///b/1585,///b/1586", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 4, "nts_short": "AUCA", "nts_long": "///b/1582,///b/1583,///b/1584,///b/1585" } ] } ], "num_iloops": 74, "iloops": [ { "index": 1, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -13, -14 ], "summary": "[2] 1 1 [b.563 b.576 b.565 b.574] 1 1", "num_nts": 6, "nts_short": "CCUAUG", "nts_long": "///b/563,///b/564,///b/565,///b/574,///b/575,///b/576", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///b/564" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///b/575" } ] }, { "index": 2, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 47, -15 ], "summary": "[2] 1 1 [b.671 b.807 b.673 b.805] 2 1", "num_nts": 6, "nts_short": "CCGCUG", "nts_long": "///b/671,///b/672,///b/673,///b/805,///b/806,///b/807", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///b/672" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///b/806" } ] }, { "index": 3, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 61, 62 ], "summary": "[2] 1 1 [b.869 b.906 b.871 b.904] 3 4", "num_nts": 6, "nts_short": "UUUAUG", "nts_long": "///b/869,///b/870,///b/871,///b/904,///b/905,///b/906", "num_stems": 2, "bridges": [ { "index": 1, 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"nts_long": "///b/1099" } ] }, { "index": 6, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 108, 109 ], "summary": "[2] 1 1 [b.1662 b.1996 b.1664 b.1994] 8 2", "num_nts": 6, "nts_short": "GAAUCC", "nts_long": "///b/1662,///b/1663,///b/1664,///b/1994,///b/1995,///b/1996", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/1663" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///b/1995" } ] }, { "index": 7, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 113, -44 ], "summary": "[2] 1 1 [b.1724 b.1734 b.1726 b.1732] 2 1", "num_nts": 6, "nts_short": "CGAUCG", "nts_long": "///b/1724,///b/1725,///b/1726,///b/1732,///b/1733,///b/1734", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///b/1725" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///b/1733" } ] }, { "index": 8, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ 136, 137 ], "summary": "[2] 1 1 [b.2084 b.2233 b.2086 b.2231] 3 5", "num_nts": 6, "nts_short": "UUGCUG", "nts_long": "///b/2084,///b/2085,///b/2086,///b/2231,///b/2232,///b/2233", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///b/2085" }, { "index": 2, "num_nts": 1, "nts_short": "U", "nts_long": "///b/2232" } ] }, { "index": 9, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -55, 148 ], "summary": "[2] 1 1 [b.2325 b.2388 b.2327 b.2386] 1 3", "num_nts": 6, "nts_short": "CAAUAG", "nts_long": "///b/2325,///b/2326,///b/2327,///b/2386,///b/2387,///b/2388", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2326" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2387" } ] }, { "index": 10, "type": "symmetric internal loop", "bridging_nts": [ 1, 1 ], "stem_indices": [ -65, 181 ], "summary": "[2] 1 1 [v.1 v.72 v.3 v.70] 1 5", "num_nts": 6, "nts_short": "CGGCCG", "nts_long": "///v/1,///v/2,///v/3,///v/70,///v/71,///v/72", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///v/2" }, { "index": 2, "num_nts": 1, "nts_short": "C", "nts_long": "///v/71" } ] }, { "index": 11, "type": "asymmetric internal loop", "bridging_nts": [ 2, 1 ], "stem_indices": [ 71, 72 ], "summary": "[2] 2 1 [b.1030 b.1122 b.1033 b.1120] 2 3", "num_nts": 7, "nts_short": "GAUGCGC", "nts_long": "///b/1030,///b/1031,///b/1032,///b/1033,///b/1120,///b/1121,///b/1122", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AU", "nts_long": "///b/1031,///b/1032" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///b/1121" } ] }, { "index": 12, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ -32, 75 ], "summary": "[2] 1 2 [b.1195 b.1249 b.1197 b.1246] 1 5", "num_nts": 7, "nts_short": "CGUAGUG", "nts_long": "///b/1195,///b/1196,///b/1197,///b/1246,///b/1247,///b/1248,///b/1249", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///b/1196" }, { "index": 2, "num_nts": 2, "nts_short": "GU", "nts_long": "///b/1247,///b/1248" } ] }, { "index": 13, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ -35, 88 ], "summary": "[2] 1 2 [b.1352 b.1378 b.1354 b.1375] 1 3 k-turn:undecided", "num_nts": 7, "nts_short": "AAGCGAU", "nts_long": "///b/1352,///b/1353,///b/1354,///b/1375,///b/1376,///b/1377,///b/1378", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/1353" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/1376,///b/1377" } ] }, { "index": 14, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ 130, 131 ], "summary": "[2] 1 2 [b.2053 b.2614 b.2055 b.2611] 3 2", "num_nts": 7, "nts_short": "ACGCUAU", "nts_long": "///b/2053,///b/2054,///b/2055,///b/2611,///b/2612,///b/2613,///b/2614", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "C", "nts_long": "///b/2054" }, { "index": 2, "num_nts": 2, "nts_short": "UA", "nts_long": "///b/2612,///b/2613" } ] }, { "index": 15, "type": "asymmetric internal loop", "bridging_nts": [ 1, 2 ], "stem_indices": [ 135, 136 ], "summary": "[2] 1 2 [b.2080 b.2238 b.2082 b.2235] 5 3", "num_nts": 7, "nts_short": "UAGUGGG", "nts_long": "///b/2080,///b/2081,///b/2082,///b/2235,///b/2236,///b/2237,///b/2238", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2081" }, { "index": 2, "num_nts": 2, "nts_short": "GG", "nts_long": "///b/2236,///b/2237" } ] }, { "index": 16, "type": "asymmetric internal loop", "bridging_nts": [ 1, 3 ], "stem_indices": [ -7, 28 ], "summary": "[2] 1 3 [b.269 b.370 b.271 b.366] 1 4", "num_nts": 8, "nts_short": "CAGCGAUG", "nts_long": "///b/269,///b/270,///b/271,///b/366,///b/367,///b/368,///b/369,///b/370", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/270" }, { "index": 2, "num_nts": 3, "nts_short": "GAU", "nts_long": "///b/367,///b/368,///b/369" } ] }, { "index": 17, "type": "asymmetric internal loop", "bridging_nts": [ 1, 3 ], "stem_indices": [ 29, 30 ], "summary": "[2] 1 3 [b.293 b.347 b.295 b.343] 13 3", "num_nts": 8, "nts_short": "UAGCAAAA", "nts_long": "///b/293,///b/294,///b/295,///b/343,///b/344,///b/345,///b/346,///b/347", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/294" }, { "index": 2, "num_nts": 3, "nts_short": "AAA", "nts_long": "///b/344,///b/345,///b/346" } ] }, { "index": 18, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 39, 40 ], "summary": "[2] 2 2 [b.536 b.556 b.539 b.553] 4 6", "num_nts": 8, "nts_short": "GGAGUGAC", "nts_long": "///b/536,///b/537,///b/538,///b/539,///b/553,///b/554,///b/555,///b/556", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/537,///b/538" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/554,///b/555" } ] }, { "index": 19, "type": "asymmetric internal loop", "bridging_nts": [ 1, 3 ], "stem_indices": [ -19, 54 ], "summary": "[2] 1 3 [b.774 b.790 b.776 b.786] 1 3", "num_nts": 8, "nts_short": "GGGCAAUC", "nts_long": "///b/774,///b/775,///b/776,///b/786,///b/787,///b/788,///b/789,///b/790", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///b/775" }, { "index": 2, "num_nts": 3, "nts_short": "AAU", "nts_long": "///b/787,///b/788,///b/789" } ] }, { "index": 20, "type": "asymmetric internal loop", "bridging_nts": [ 3, 1 ], "stem_indices": [ 83, 84 ], "summary": "[2] 3 1 [b.1318 b.1332 b.1322 b.1330] 6 2", "num_nts": 8, "nts_short": "CCAACGGG", "nts_long": "///b/1318,///b/1319,///b/1320,///b/1321,///b/1322,///b/1330,///b/1331,///b/1332", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "CAA", "nts_long": "///b/1319,///b/1320,///b/1321" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///b/1331" } ] }, { "index": 21, "type": "asymmetric internal loop", "bridging_nts": [ 1, 3 ], "stem_indices": [ -54, 146 ], "summary": "[2] 1 3 [b.2296 b.2320 b.2298 b.2316] 1 5", "num_nts": 8, "nts_short": "AAUAGGUU", "nts_long": "///b/2296,///b/2297,///b/2298,///b/2316,///b/2317,///b/2318,///b/2319,///b/2320", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2297" }, { "index": 2, "num_nts": 3, "nts_short": "GGU", "nts_long": "///b/2317,///b/2318,///b/2319" } ] }, { "index": 22, "type": "symmetric internal loop", "bridging_nts": [ 2, 2 ], "stem_indices": [ 149, 150 ], "summary": "[2] 2 2 [b.2349 b.2366 b.2352 b.2363] 4 4", "num_nts": 8, "nts_short": "CGAGCGAG", "nts_long": "///b/2349,///b/2350,///b/2351,///b/2352,///b/2363,///b/2364,///b/2365,///b/2366", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/2350,///b/2351" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/2364,///b/2365" } ] }, { "index": 23, "type": "asymmetric internal loop", "bridging_nts": [ 1, 3 ], "stem_indices": [ -59, 155 ], "summary": "[2] 1 3 [b.2458 b.2492 b.2460 b.2488] 1 6", "num_nts": 8, "nts_short": "AUAUGUUU", "nts_long": "///b/2458,///b/2459,///b/2460,///b/2488,///b/2489,///b/2490,///b/2491,///b/2492", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///b/2459" }, { "index": 2, "num_nts": 3, "nts_short": "GUU", "nts_long": "///b/2489,///b/2490,///b/2491" } ] }, { "index": 24, "type": "asymmetric internal loop", "bridging_nts": [ 1, 3 ], "stem_indices": [ 158, -60 ], "summary": "[2] 1 3 [b.2509 b.2577 b.2511 b.2573] 3 1", "num_nts": 8, "nts_short": "CUCGCGAG", "nts_long": "///b/2509,///b/2510,///b/2511,///b/2573,///b/2574,///b/2575,///b/2576,///b/2577", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///b/2510" }, { "index": 2, "num_nts": 3, "nts_short": "CGA", "nts_long": "///b/2574,///b/2575,///b/2576" } ] }, { "index": 25, "type": "asymmetric internal loop", "bridging_nts": [ 3, 1 ], "stem_indices": [ 168, 169 ], "summary": "[2] 3 1 [b.2679 b.2726 b.2683 b.2724] 5 4", "num_nts": 8, "nts_short": "UCACUAAA", "nts_long": "///b/2679,///b/2680,///b/2681,///b/2682,///b/2683,///b/2724,///b/2725,///b/2726", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "CAC", "nts_long": "///b/2680,///b/2681,///b/2682" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2725" } ] }, { "index": 26, "type": "asymmetric internal loop", "bridging_nts": [ 3, 2 ], "stem_indices": [ 60, 61 ], "summary": "[2] 3 2 [b.863 b.911 b.867 b.908] 2 3", "num_nts": 9, "nts_short": "GCACUAAAC", "nts_long": "///b/863,///b/864,///b/865,///b/866,///b/867,///b/908,///b/909,///b/910,///b/911", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "CAC", "nts_long": "///b/864,///b/865,///b/866" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/909,///b/910" } ] }, { "index": 27, "type": "asymmetric internal loop", "bridging_nts": [ 3, 2 ], "stem_indices": [ 75, 76 ], "summary": "[2] 3 2 [b.1201 b.1242 b.1205 b.1239] 5 3", "num_nts": 9, "nts_short": "GUAAGUAUC", "nts_long": "///b/1201,///b/1202,///b/1203,///b/1204,///b/1205,///b/1239,///b/1240,///b/1241,///b/1242", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UAA", "nts_long": "///b/1202,///b/1203,///b/1204" }, { "index": 2, "num_nts": 2, "nts_short": "AU", "nts_long": "///b/1240,///b/1241" } ] }, { "index": 28, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ 94, 95 ], "summary": "[2] 2 3 [b.1431 b.1560 b.1434 b.1556] 4 3", "num_nts": 9, "nts_short": "GAAGCCUGC", "nts_long": "///b/1431,///b/1432,///b/1433,///b/1434,///b/1556,///b/1557,///b/1558,///b/1559,///b/1560", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/1432,///b/1433" }, { "index": 2, "num_nts": 3, "nts_short": "CUG", "nts_long": "///b/1557,///b/1558,///b/1559" } ] }, { "index": 29, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ 95, 96 ], "summary": "[2] 2 3 [b.1436 b.1554 b.1439 b.1550] 3 5", "num_nts": 9, "nts_short": "CUAUAAAUG", "nts_long": "///b/1436,///b/1437,///b/1438,///b/1439,///b/1550,///b/1551,///b/1552,///b/1553,///b/1554", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UA", "nts_long": "///b/1437,///b/1438" }, { "index": 2, "num_nts": 3, "nts_short": "AAU", "nts_long": "///b/1551,///b/1552,///b/1553" } ] }, { "index": 30, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ 99, 100 ], "summary": "[2] 2 3 [b.1467 b.1523 b.1470 b.1519] 2 4", "num_nts": 9, "nts_short": "UAAGUGAUG", "nts_long": "///b/1467,///b/1468,///b/1469,///b/1470,///b/1519,///b/1520,///b/1521,///b/1522,///b/1523", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/1468,///b/1469" }, { "index": 2, "num_nts": 3, "nts_short": "GAU", "nts_long": "///b/1520,///b/1521,///b/1522" } ] }, { "index": 31, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ -38, 104 ], "summary": "[2] 2 3 [b.1525 b.1545 b.1528 b.1541] 1 5", "num_nts": 9, "nts_short": "CGAGUGAAG", "nts_long": "///b/1525,///b/1526,///b/1527,///b/1528,///b/1541,///b/1542,///b/1543,///b/1544,///b/1545", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/1526,///b/1527" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/1542,///b/1543,///b/1544" } ] }, { "index": 32, "type": "asymmetric internal loop", "bridging_nts": [ 4, 1 ], "stem_indices": [ 107, 108 ], "summary": "[2] 4 1 [b.1650 b.2005 b.1655 b.2003] 4 8", "num_nts": 9, "nts_short": "GAGAACGAC", "nts_long": "///b/1650,///b/1651,///b/1652,///b/1653,///b/1654,///b/1655,///b/2003,///b/2004,///b/2005", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AGAA", "nts_long": "///b/1651,///b/1652,///b/1653,///b/1654" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2004" } ] }, { "index": 33, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ 124, 125 ], "summary": "[2] 2 3 [b.1863 b.1877 b.1866 b.1873] 5 2", "num_nts": 9, "nts_short": "UUAGCGAAG", "nts_long": "///b/1863,///b/1864,///b/1865,///b/1866,///b/1873,///b/1874,///b/1875,///b/1876,///b/1877", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "UA", "nts_long": "///b/1864,///b/1865" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/1874,///b/1875,///b/1876" } ] }, { "index": 34, "type": "asymmetric internal loop", "bridging_nts": [ 2, 3 ], "stem_indices": [ 178, 179 ], "summary": "[2] 2 3 [b.2842 b.2873 b.2845 b.2869] 5 2", "num_nts": 9, "nts_short": "GGUGCUAAC", "nts_long": "///b/2842,///b/2843,///b/2844,///b/2845,///b/2869,///b/2870,///b/2871,///b/2872,///b/2873", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GU", "nts_long": "///b/2843,///b/2844" }, { "index": 2, "num_nts": 3, "nts_short": "UAA", "nts_long": "///b/2870,///b/2871,///b/2872" } ] }, { "index": 35, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 5, -1 ], "summary": "[2] 3 3 [a.34 a.48 a.38 a.44] 4 1", "num_nts": 10, "nts_short": "ACCCCGAACU", "nts_long": "///a/34,///a/35,///a/36,///a/37,///a/38,///a/44,///a/45,///a/46,///a/47,///a/48", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "CCC", "nts_long": "///a/35,///a/36,///a/37" }, { "index": 2, "num_nts": 3, "nts_short": "AAC", "nts_long": "///a/45,///a/46,///a/47" } ] }, { "index": 36, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ -3, 17 ], "summary": "[2] 3 3 [b.61 b.93 b.65 b.89] 1 2", "num_nts": 10, "nts_short": "CUAAUAUAUG", "nts_long": "///b/61,///b/62,///b/63,///b/64,///b/65,///b/89,///b/90,///b/91,///b/92,///b/93", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UAA", "nts_long": "///b/62,///b/63,///b/64" }, { "index": 2, "num_nts": 3, "nts_short": "UAU", "nts_long": "///b/90,///b/91,///b/92" } ] }, { "index": 37, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 43, 44 ], "summary": "[2] 3 3 [b.605 b.621 b.609 b.617] 3 2", "num_nts": 10, "nts_short": "UUAACGGGAG", "nts_long": "///b/605,///b/606,///b/607,///b/608,///b/609,///b/617,///b/618,///b/619,///b/620,///b/621", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UAA", "nts_long": "///b/606,///b/607,///b/608" }, { "index": 2, "num_nts": 3, "nts_short": "GGA", "nts_long": "///b/618,///b/619,///b/620" } ] }, { "index": 38, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ -17, 51 ], "summary": "[2] 3 3 [b.702 b.727 b.706 b.723] 1 6", "num_nts": 10, "nts_short": "UGAAGUGGAG", "nts_long": "///b/702,///b/703,///b/704,///b/705,///b/706,///b/723,///b/724,///b/725,///b/726,///b/727", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/703,///b/704,///b/705" }, { "index": 2, "num_nts": 3, "nts_short": "GGA", "nts_long": "///b/724,///b/725,///b/726" } ] }, { "index": 39, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 57, 58 ], "summary": "[2] 3 3 [b.843 b.933 b.847 b.929] 7 3", "num_nts": 10, "nts_short": "AAUUCGUUAU", "nts_long": "///b/843,///b/844,///b/845,///b/846,///b/847,///b/929,///b/930,///b/931,///b/932,///b/933", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "AUU", "nts_long": "///b/844,///b/845,///b/846" }, { "index": 2, "num_nts": 3, "nts_short": "UUA", "nts_long": "///b/930,///b/931,///b/932" } ] }, { "index": 40, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 62, 63 ], "summary": "[2] 3 3 [b.874 b.901 b.878 b.897] 4 2", "num_nts": 10, "nts_short": "GCAAGCAACC", "nts_long": "///b/874,///b/875,///b/876,///b/877,///b/878,///b/897,///b/898,///b/899,///b/900,///b/901", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "CAA", "nts_long": "///b/875,///b/876,///b/877" }, { "index": 2, "num_nts": 3, "nts_short": "AAC", "nts_long": "///b/898,///b/899,///b/900" } ] }, { "index": 41, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 67, 68 ], "summary": "[2] 3 3 [b.997 b.1156 b.1001 b.1152] 3 3", "num_nts": 10, "nts_short": "CUAAGCGAAG", "nts_long": "///b/997,///b/998,///b/999,///b/1000,///b/1001,///b/1152,///b/1153,///b/1154,///b/1155,///b/1156", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UAA", "nts_long": "///b/998,///b/999,///b/1000" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/1153,///b/1154,///b/1155" } ] }, { "index": 42, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ -28, -29 ], "summary": "[2] 3 3 [b.1058 b.1078 b.1062 b.1074] 1 1", "num_nts": 10, "nts_short": "GUUGGCCAUC", "nts_long": "///b/1058,///b/1059,///b/1060,///b/1061,///b/1062,///b/1074,///b/1075,///b/1076,///b/1077,///b/1078", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UUG", "nts_long": "///b/1059,///b/1060,///b/1061" }, { "index": 2, "num_nts": 3, "nts_short": "CAU", "nts_long": "///b/1075,///b/1076,///b/1077" } ] }, { "index": 43, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 88, 89 ], "summary": "[2] 3 3 [b.1356 b.1373 b.1360 b.1369] 3 3", "num_nts": 10, "nts_short": "CGAGGCGUAG", "nts_long": "///b/1356,///b/1357,///b/1358,///b/1359,///b/1360,///b/1369,///b/1370,///b/1371,///b/1372,///b/1373", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAG", "nts_long": "///b/1357,///b/1358,///b/1359" }, { "index": 2, "num_nts": 3, "nts_short": "GUA", "nts_long": "///b/1370,///b/1371,///b/1372" } ] }, { "index": 44, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 92, 93 ], "summary": "[2] 3 3 [b.1416 b.1580 b.1420 b.1576] 2 4", "num_nts": 10, "nts_short": "CGAAGCUAAG", "nts_long": "///b/1416,///b/1417,///b/1418,///b/1419,///b/1420,///b/1576,///b/1577,///b/1578,///b/1579,///b/1580", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/1417,///b/1418,///b/1419" }, { "index": 2, "num_nts": 3, "nts_short": "UAA", "nts_long": "///b/1577,///b/1578,///b/1579" } ] }, { "index": 45, "type": "asymmetric internal loop", "bridging_nts": [ 4, 2 ], "stem_indices": [ -40, -41 ], "summary": "[2] 4 2 [b.1668 b.1992 b.1673 b.1989] 1 1", "num_nts": 10, "nts_short": "ACUAGGCUGU", "nts_long": "///b/1668,///b/1669,///b/1670,///b/1671,///b/1672,///b/1673,///b/1989,///b/1990,///b/1991,///b/1992", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "CUAG", "nts_long": "///b/1669,///b/1670,///b/1671,///b/1672" }, { "index": 2, "num_nts": 2, "nts_short": "UG", "nts_long": "///b/1990,///b/1991" } ] }, { "index": 46, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 112, 113 ], "summary": "[2] 3 3 [b.1719 b.1739 b.1723 b.1735] 3 2", "num_nts": 10, "nts_short": "UGAAGUGGAG", "nts_long": "///b/1719,///b/1720,///b/1721,///b/1722,///b/1723,///b/1735,///b/1736,///b/1737,///b/1738,///b/1739", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/1720,///b/1721,///b/1722" }, { "index": 2, "num_nts": 3, "nts_short": "GGA", "nts_long": "///b/1736,///b/1737,///b/1738" } ] }, { "index": 47, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 155, 156 ], "summary": "[2] 3 3 [b.2465 b.2483 b.2469 b.2479] 6 2", "num_nts": 10, "nts_short": "CCAAGCGACG", "nts_long": "///b/2465,///b/2466,///b/2467,///b/2468,///b/2469,///b/2479,///b/2480,///b/2481,///b/2482,///b/2483", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "CAA", "nts_long": "///b/2466,///b/2467,///b/2468" }, { "index": 2, "num_nts": 3, "nts_short": "GAC", "nts_long": "///b/2480,///b/2481,///b/2482" } ] }, { "index": 48, "type": "symmetric internal loop", "bridging_nts": [ 3, 3 ], "stem_indices": [ 169, 170 ], "summary": "[2] 3 3 [b.2686 b.2721 b.2690 b.2717] 4 5", "num_nts": 10, "nts_short": "UGUUCGGUAG", "nts_long": "///b/2686,///b/2687,///b/2688,///b/2689,///b/2690,///b/2717,///b/2718,///b/2719,///b/2720,///b/2721", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GUU", "nts_long": "///b/2687,///b/2688,///b/2689" }, { "index": 2, "num_nts": 3, "nts_short": "GUA", "nts_long": "///b/2718,///b/2719,///b/2720" } ] }, { "index": 49, "type": "asymmetric internal loop", "bridging_nts": [ 4, 2 ], "stem_indices": [ -64, 175 ], "summary": "[2] 4 2 [b.2805 b.2891 b.2810 b.2888] 1 2", "num_nts": 10, "nts_short": "CUGAAGCGUG", "nts_long": "///b/2805,///b/2806,///b/2807,///b/2808,///b/2809,///b/2810,///b/2888,///b/2889,///b/2890,///b/2891", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "UGAA", "nts_long": "///b/2806,///b/2807,///b/2808,///b/2809" }, { "index": 2, "num_nts": 2, "nts_short": "GU", "nts_long": "///b/2889,///b/2890" } ] }, { "index": 50, "type": "asymmetric internal loop", "bridging_nts": [ 4, 3 ], "stem_indices": [ 3, 4 ], "summary": "[2] 4 3 [a.23 a.60 a.28 a.56] 6 3", "num_nts": 11, "nts_short": "GGUCCCGAAAC", "nts_long": "///a/23,///a/24,///a/25,///a/26,///a/27,///a/28,///a/56,///a/57,///a/58,///a/59,///a/60", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GUCC", "nts_long": "///a/24,///a/25,///a/26,///a/27" }, { "index": 2, "num_nts": 3, "nts_short": "AAA", "nts_long": "///a/57,///a/58,///a/59" } ] }, { "index": 51, "type": "asymmetric internal loop", "bridging_nts": [ 4, 3 ], "stem_indices": [ 179, 180 ], "summary": "[2] 4 3 [b.2846 b.2868 b.2851 b.2864] 2 5", "num_nts": 11, "nts_short": "UGUAAGUUGAG", "nts_long": "///b/2846,///b/2847,///b/2848,///b/2849,///b/2850,///b/2851,///b/2864,///b/2865,///b/2866,///b/2867,///b/2868", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GUAA", "nts_long": "///b/2847,///b/2848,///b/2849,///b/2850" }, { "index": 2, "num_nts": 3, "nts_short": "UGA", "nts_long": "///b/2865,///b/2866,///b/2867" } ] }, { "index": 52, "type": "asymmetric internal loop", "bridging_nts": [ 5, 3 ], "stem_indices": [ 70, -25 ], "summary": "[2] 5 3 [b.1017 b.1143 b.1023 b.1139] 6 1", "num_nts": 12, "nts_short": "UUAAGUGCUAAA", "nts_long": "///b/1017,///b/1018,///b/1019,///b/1020,///b/1021,///b/1022,///b/1023,///b/1139,///b/1140,///b/1141,///b/1142,///b/1143", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UAAGU", "nts_long": "///b/1018,///b/1019,///b/1020,///b/1021,///b/1022" }, { "index": 2, "num_nts": 3, "nts_short": "UAA", "nts_long": "///b/1140,///b/1141,///b/1142" } ] }, { "index": 53, "type": "asymmetric internal loop", "bridging_nts": [ 5, 3 ], "stem_indices": [ 111, 112 ], "summary": "[2] 5 3 [b.1711 b.1745 b.1717 b.1741] 6 3", "num_nts": 12, "nts_short": "UAUGUAGUGAAA", "nts_long": "///b/1711,///b/1712,///b/1713,///b/1714,///b/1715,///b/1716,///b/1717,///b/1741,///b/1742,///b/1743,///b/1744,///b/1745", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "AUGUA", "nts_long": "///b/1712,///b/1713,///b/1714,///b/1715,///b/1716" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/1742,///b/1743,///b/1744" } ] }, { "index": 54, "type": "symmetric internal loop", "bridging_nts": [ 4, 4 ], "stem_indices": [ 172, 173 ], "summary": "[2] 4 4 [b.2736 b.2766 b.2741 b.2761] 3 4", "num_nts": 12, "nts_short": "GAUAAGCGAAAC", "nts_long": "///b/2736,///b/2737,///b/2738,///b/2739,///b/2740,///b/2741,///b/2761,///b/2762,///b/2763,///b/2764,///b/2765,///b/2766", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "AUAA", "nts_long": "///b/2737,///b/2738,///b/2739,///b/2740" }, { "index": 2, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///b/2762,///b/2763,///b/2764,///b/2765" } ] }, { "index": 55, "type": "asymmetric internal loop", "bridging_nts": [ 5, 4 ], "stem_indices": [ 25, 26 ], "summary": "[2] 5 4 [b.239 b.258 b.245 b.253] 5 2", "num_nts": 13, "nts_short": "CCAGUAGCGAACG", "nts_long": "///b/239,///b/240,///b/241,///b/242,///b/243,///b/244,///b/245,///b/253,///b/254,///b/255,///b/256,///b/257,///b/258", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "CAGUA", "nts_long": "///b/240,///b/241,///b/242,///b/243,///b/244" }, { "index": 2, "num_nts": 4, "nts_short": "GAAC", "nts_long": "///b/254,///b/255,///b/256,///b/257" } ] }, { "index": 56, "type": "asymmetric internal loop", "bridging_nts": [ 6, 3 ], "stem_indices": [ 28, 29 ], "summary": "[2] 6 3 [b.274 b.363 b.281 b.359] 4 13", "num_nts": 13, "nts_short": "CCUGAAUCGUGAG", "nts_long": "///b/274,///b/275,///b/276,///b/277,///b/278,///b/279,///b/280,///b/281,///b/359,///b/360,///b/361,///b/362,///b/363", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "CUGAAU", "nts_long": "///b/275,///b/276,///b/277,///b/278,///b/279,///b/280" }, { "index": 2, "num_nts": 3, "nts_short": "UGA", "nts_long": "///b/360,///b/361,///b/362" } ] }, { "index": 57, "type": "asymmetric internal loop", "bridging_nts": [ 3, 6 ], "stem_indices": [ -15, 48 ], "summary": "[2] 3 6 [b.673 b.805 b.677 b.798] 1 6", "num_nts": 13, "nts_short": "GAAACGAGAUAGC", "nts_long": "///b/673,///b/674,///b/675,///b/676,///b/677,///b/798,///b/799,///b/800,///b/801,///b/802,///b/803,///b/804,///b/805", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "AAA", "nts_long": "///b/674,///b/675,///b/676" }, { "index": 2, "num_nts": 6, "nts_short": "AGAUAG", "nts_long": "///b/799,///b/800,///b/801,///b/802,///b/803,///b/804" } ] }, { "index": 58, "type": "asymmetric internal loop", "bridging_nts": [ 6, 3 ], "stem_indices": [ 76, 77 ], "summary": "[2] 6 3 [b.1207 b.1237 b.1214 b.1233] 3 8 k-turn:normal", "num_nts": 13, "nts_short": "CUGCGAAGUGGAG", "nts_long": "///b/1207,///b/1208,///b/1209,///b/1210,///b/1211,///b/1212,///b/1213,///b/1214,///b/1233,///b/1234,///b/1235,///b/1236,///b/1237", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UGCGAA", "nts_long": "///b/1208,///b/1209,///b/1210,///b/1211,///b/1212,///b/1213" }, { "index": 2, "num_nts": 3, "nts_short": "GGA", "nts_long": "///b/1234,///b/1235,///b/1236" } ] }, { "index": 59, "type": "asymmetric internal loop", "bridging_nts": [ 4, 5 ], "stem_indices": [ 110, -42 ], "summary": "[2] 4 5 [b.1685 b.1701 b.1690 b.1695] 5 1", "num_nts": 13, "nts_short": "CGUAACGGAGAAG", "nts_long": "///b/1685,///b/1686,///b/1687,///b/1688,///b/1689,///b/1690,///b/1695,///b/1696,///b/1697,///b/1698,///b/1699,///b/1700,///b/1701", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GUAA", "nts_long": "///b/1686,///b/1687,///b/1688,///b/1689" }, { "index": 2, "num_nts": 5, "nts_short": "GAGAA", "nts_long": "///b/1696,///b/1697,///b/1698,///b/1699,///b/1700" } ] }, { "index": 60, "type": "asymmetric internal loop", "bridging_nts": [ 5, 4 ], "stem_indices": [ 167, -62 ], "summary": "[2] 5 4 [b.2651 b.2667 b.2657 b.2662] 7 1", "num_nts": 13, "nts_short": "CUAGUACGGACCG", "nts_long": "///b/2651,///b/2652,///b/2653,///b/2654,///b/2655,///b/2656,///b/2657,///b/2662,///b/2663,///b/2664,///b/2665,///b/2666,///b/2667", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UAGUA", "nts_long": "///b/2652,///b/2653,///b/2654,///b/2655,///b/2656" }, { "index": 2, "num_nts": 4, "nts_short": "GACC", "nts_long": "///b/2663,///b/2664,///b/2665,///b/2666" } ] }, { "index": 61, "type": "symmetric internal loop", "bridging_nts": [ 5, 5 ], "stem_indices": [ 9, -2 ], "summary": "[2] 5 5 [b.24 b.516 b.30 b.510] 10 1", "num_nts": 14, "nts_short": "GUGGAUGCUGAAAC", "nts_long": "///b/24,///b/25,///b/26,///b/27,///b/28,///b/29,///b/30,///b/510,///b/511,///b/512,///b/513,///b/514,///b/515,///b/516", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "UGGAU", "nts_long": "///b/25,///b/26,///b/27,///b/28,///b/29" }, { "index": 2, "num_nts": 5, "nts_short": "UGAAA", "nts_long": "///b/511,///b/512,///b/513,///b/514,///b/515" } ] }, { "index": 62, "type": "asymmetric internal loop", "bridging_nts": [ 3, 7 ], "stem_indices": [ 18, 19 ], "summary": "[2] 3 7 [b.81 b.105 b.85 b.97] 6 3", "num_nts": 14, "nts_short": "GUAAGCGUUAUAAC", "nts_long": "///b/81,///b/82,///b/83,///b/84,///b/85,///b/97,///b/98,///b/99,///b/100,///b/101,///b/102,///b/103,///b/104,///b/105", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UAA", "nts_long": "///b/82,///b/83,///b/84" }, { "index": 2, "num_nts": 7, "nts_short": "GUUAUAA", "nts_long": "///b/98,///b/99,///b/100,///b/101,///b/102,///b/103,///b/104" } ] }, { "index": 63, "type": "symmetric internal loop", "bridging_nts": [ 5, 5 ], "stem_indices": [ 59, -21 ], "summary": "[2] 5 5 [b.855 b.920 b.861 b.914] 6 1", "num_nts": 14, "nts_short": "GGGGUAGCGAAUAC", "nts_long": "///b/855,///b/856,///b/857,///b/858,///b/859,///b/860,///b/861,///b/914,///b/915,///b/916,///b/917,///b/918,///b/919,///b/920", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GGGUA", "nts_long": "///b/856,///b/857,///b/858,///b/859,///b/860" }, { "index": 2, "num_nts": 5, "nts_short": "GAAUA", "nts_long": "///b/915,///b/916,///b/917,///b/918,///b/919" } ] }, { "index": 64, "type": "asymmetric internal loop", "bridging_nts": [ 7, 3 ], "stem_indices": [ -26, 73 ], "summary": "[2] 7 3 [b.1042 b.1111 b.1050 b.1107] 1 2 k-turn:normal", "num_nts": 14, "nts_short": "CCCAGACAGUCGAG", "nts_long": "///b/1042,///b/1043,///b/1044,///b/1045,///b/1046,///b/1047,///b/1048,///b/1049,///b/1050,///b/1107,///b/1108,///b/1109,///b/1110,///b/1111", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "CCAGACA", "nts_long": "///b/1043,///b/1044,///b/1045,///b/1046,///b/1047,///b/1048,///b/1049" }, { "index": 2, "num_nts": 3, "nts_short": "CGA", "nts_long": "///b/1108,///b/1109,///b/1110" } ] }, { "index": 65, "type": "asymmetric internal loop", "bridging_nts": [ 3, 7 ], "stem_indices": [ 165, 166 ], "summary": "[2] 3 7 [b.2635 b.2781 b.2639 b.2773] 7 4", "num_nts": 14, "nts_short": "CUGAGCGAGAUGAG", "nts_long": "///b/2635,///b/2636,///b/2637,///b/2638,///b/2639,///b/2773,///b/2774,///b/2775,///b/2776,///b/2777,///b/2778,///b/2779,///b/2780,///b/2781", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UGA", "nts_long": "///b/2636,///b/2637,///b/2638" }, { "index": 2, "num_nts": 7, "nts_short": "GAGAUGA", "nts_long": "///b/2774,///b/2775,///b/2776,///b/2777,///b/2778,///b/2779,///b/2780" } ] }, { "index": 66, "type": "asymmetric internal loop", "bridging_nts": [ 5, 6 ], "stem_indices": [ 23, -5 ], "summary": "[2] 5 6 [b.188 b.208 b.194 b.201] 5 1", "num_nts": 15, "nts_short": "GGAACUGCUAAGUAC", "nts_long": "///b/188,///b/189,///b/190,///b/191,///b/192,///b/193,///b/194,///b/201,///b/202,///b/203,///b/204,///b/205,///b/206,///b/207,///b/208", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAACU", "nts_long": "///b/189,///b/190,///b/191,///b/192,///b/193" }, { "index": 2, "num_nts": 6, "nts_short": "UAAGUA", "nts_long": "///b/202,///b/203,///b/204,///b/205,///b/206,///b/207" } ] }, { "index": 67, "type": "asymmetric internal loop", "bridging_nts": [ 6, 5 ], "stem_indices": [ -33, 78 ], "summary": "[2] 6 5 [b.1261 b.2016 b.1268 b.2010] 1 2", "num_nts": 15, "nts_short": "AUAAGUAAUGAAAUU", "nts_long": "///b/1261,///b/1262,///b/1263,///b/1264,///b/1265,///b/1266,///b/1267,///b/1268,///b/2010,///b/2011,///b/2012,///b/2013,///b/2014,///b/2015,///b/2016", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "UAAGUA", "nts_long": "///b/1262,///b/1263,///b/1264,///b/1265,///b/1266,///b/1267" }, { "index": 2, "num_nts": 5, "nts_short": "GAAAU", "nts_long": "///b/2011,///b/2012,///b/2013,///b/2014,///b/2015" } ] }, { "index": 68, "type": "symmetric internal loop", "bridging_nts": [ 6, 6 ], "stem_indices": [ 72, -26 ], "summary": "[2] 6 6 [b.1035 b.1118 b.1042 b.1111] 3 1", "num_nts": 16, "nts_short": "GGGAAGGCGUCGGCCU", "nts_long": "///b/1035,///b/1036,///b/1037,///b/1038,///b/1039,///b/1040,///b/1041,///b/1042,///b/1111,///b/1112,///b/1113,///b/1114,///b/1115,///b/1116,///b/1117,///b/1118", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GGAAGG", "nts_long": "///b/1036,///b/1037,///b/1038,///b/1039,///b/1040,///b/1041" }, { "index": 2, "num_nts": 6, "nts_short": "UCGGCC", "nts_long": "///b/1112,///b/1113,///b/1114,///b/1115,///b/1116,///b/1117" } ] }, { "index": 69, "type": "asymmetric internal loop", "bridging_nts": [ 5, 7 ], "stem_indices": [ 117, 118 ], "summary": "[2] 5 7 [b.1797 b.1820 b.1803 b.1812] 7 3 k-turn:undecided", "num_nts": 16, "nts_short": "UGCAAACGGACGUAUA", "nts_long": "///b/1797,///b/1798,///b/1799,///b/1800,///b/1801,///b/1802,///b/1803,///b/1812,///b/1813,///b/1814,///b/1815,///b/1816,///b/1817,///b/1818,///b/1819,///b/1820", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GCAAA", "nts_long": "///b/1798,///b/1799,///b/1800,///b/1801,///b/1802" }, { "index": 2, "num_nts": 7, "nts_short": "GACGUAU", "nts_long": "///b/1813,///b/1814,///b/1815,///b/1816,///b/1817,///b/1818,///b/1819" } ] }, { "index": 70, "type": "asymmetric internal loop", "bridging_nts": [ 10, 2 ], "stem_indices": [ -48, 127 ], "summary": "[2] 10 2 [b.1933 b.1963 b.1944 b.1960] 1 5", "num_nts": 16, "nts_short": "CGAAAUUCCUUGCCUG", "nts_long": "///b/1933,///b/1934,///b/1935,///b/1936,///b/1937,///b/1938,///b/1939,///b/1940,///b/1941,///b/1942,///b/1943,///b/1944,///b/1960,///b/1961,///b/1962,///b/1963", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 10, "nts_short": "GAAAUUCCUU", "nts_long": "///b/1934,///b/1935,///b/1936,///b/1937,///b/1938,///b/1939,///b/1940,///b/1941,///b/1942,///b/1943" }, { "index": 2, "num_nts": 2, "nts_short": "CU", "nts_long": "///b/1961,///b/1962" } ] }, { "index": 71, "type": "symmetric internal loop", "bridging_nts": [ 7, 7 ], "stem_indices": [ 6, 7 ], "summary": "[2] 7 7 [a.71 a.105 a.79 a.97] 2 8", "num_nts": 18, "nts_short": "CGAUGGUAGCGAGAGUAG", "nts_long": "///a/71,///a/72,///a/73,///a/74,///a/75,///a/76,///a/77,///a/78,///a/79,///a/97,///a/98,///a/99,///a/100,///a/101,///a/102,///a/103,///a/104,///a/105", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "GAUGGUA", "nts_long": "///a/72,///a/73,///a/74,///a/75,///a/76,///a/77,///a/78" }, { "index": 2, "num_nts": 7, "nts_short": "GAGAGUA", "nts_long": "///a/98,///a/99,///a/100,///a/101,///a/102,///a/103,///a/104" } ] }, { "index": 72, "type": "asymmetric internal loop", "bridging_nts": [ 2, 12 ], "stem_indices": [ -10, 38 ], "summary": "[2] 2 12 [b.481 b.509 b.484 b.496] 1 4", "num_nts": 18, "nts_short": "GAACGAGUGAAAAAGAAC", "nts_long": "///b/481,///b/482,///b/483,///b/484,///b/496,///b/497,///b/498,///b/499,///b/500,///b/501,///b/502,///b/503,///b/504,///b/505,///b/506,///b/507,///b/508,///b/509", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/482,///b/483" }, { "index": 2, "num_nts": 12, "nts_short": "AGUGAAAAAGAA", "nts_long": "///b/497,///b/498,///b/499,///b/500,///b/501,///b/502,///b/503,///b/504,///b/505,///b/506,///b/507,///b/508" } ] }, { "index": 73, "type": "symmetric internal loop", "bridging_nts": [ 8, 8 ], "stem_indices": [ 123, 124 ], "summary": "[2] 8 8 [b.1850 b.1890 b.1859 b.1881] 3 5", "num_nts": 20, "nts_short": "UUAAUUGAUGUUGAUCGAAG", "nts_long": "///b/1850,///b/1851,///b/1852,///b/1853,///b/1854,///b/1855,///b/1856,///b/1857,///b/1858,///b/1859,///b/1881,///b/1882,///b/1883,///b/1884,///b/1885,///b/1886,///b/1887,///b/1888,///b/1889,///b/1890", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 8, "nts_short": "UAAUUGAU", "nts_long": "///b/1851,///b/1852,///b/1853,///b/1854,///b/1855,///b/1856,///b/1857,///b/1858" }, { "index": 2, "num_nts": 8, "nts_short": "UGAUCGAA", "nts_long": "///b/1882,///b/1883,///b/1884,///b/1885,///b/1886,///b/1887,///b/1888,///b/1889" } ] }, { "index": 74, "type": "asymmetric internal loop", "bridging_nts": [ 17, 8 ], "stem_indices": [ 138, -50 ], "summary": "[2] 17 8 [b.2102 b.2185 b.2120 b.2176] 11 1", "num_nts": 29, "nts_short": "CCUUGAUGUGUAGGAUAGGCCCUUUAAUG", "nts_long": "///b/2102,///b/2103,///b/2104,///b/2105,///b/2106,///b/2107,///b/2108,///b/2109,///b/2110,///b/2111,///b/2112,///b/2113,///b/2114,///b/2115,///b/2116,///b/2117,///b/2118,///b/2119,///b/2120,///b/2176,///b/2177,///b/2178,///b/2179,///b/2180,///b/2181,///b/2182,///b/2183,///b/2184,///b/2185", "num_stems": 2, "bridges": [ { "index": 1, "num_nts": 17, "nts_short": "CUUGAUGUGUAGGAUAG", "nts_long": "///b/2103,///b/2104,///b/2105,///b/2106,///b/2107,///b/2108,///b/2109,///b/2110,///b/2111,///b/2112,///b/2113,///b/2114,///b/2115,///b/2116,///b/2117,///b/2118,///b/2119" }, { "index": 2, "num_nts": 8, "nts_short": "CCUUUAAU", "nts_long": "///b/2177,///b/2178,///b/2179,///b/2180,///b/2181,///b/2182,///b/2183,///b/2184" } ] } ], "num_junctions": 38, "junctions": [ { "index": 1, "type": "3-way junction", "bridging_nts": [ 1, 0, 1 ], "stem_indices": [ -63, 174, -64 ], "summary": "[3] 1 0 1 [b.2788 b.2893 b.2790 b.2804 b.2805 b.2891] 1 5 1", "num_nts": 8, "nts_short": "CUGCCGAG", "nts_long": "///b/2788,///b/2789,///b/2790,///b/2804,///b/2805,///b/2891,///b/2892,///b/2893", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///b/2789" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2892" } ] }, { "index": 2, "type": "3-way junction", "bridging_nts": [ 0, 6, 0 ], "stem_indices": [ -2, 10, -10 ], "summary": "[3] 0 6 0 [b.30 b.510 b.31 b.474 b.481 b.509] 1 2 1", "num_nts": 12, "nts_short": "GCGCGAAAAGCC", "nts_long": "///b/30,///b/31,///b/474,///b/475,///b/476,///b/477,///b/478,///b/479,///b/480,///b/481,///b/509,///b/510", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 6, "nts_short": "CGAAAA", "nts_long": "///b/475,///b/476,///b/477,///b/478,///b/479,///b/480" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 3, "type": "3-way junction", "bridging_nts": [ 1, 3, 2 ], "stem_indices": [ -16, 50, 52 ], "summary": "[3] 1 3 2 [b.697 b.762 b.699 b.731 b.735 b.759] 1 3 3", "num_nts": 12, "nts_short": "CAGCGAACGAUG", "nts_long": "///b/697,///b/698,///b/699,///b/731,///b/732,///b/733,///b/734,///b/735,///b/759,///b/760,///b/761,///b/762", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/698" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/732,///b/733,///b/734" }, { "index": 3, "num_nts": 2, "nts_short": "AU", "nts_long": "///b/760,///b/761" } ] }, { "index": 4, "type": "3-way junction", "bridging_nts": [ 1, 1, 4 ], "stem_indices": [ 145, -54, 147 ], "summary": "[3] 1 1 4 [b.2294 b.2336 b.2296 b.2320 b.2322 b.2331] 7 1 2", "num_nts": 12, "nts_short": "CUAUAGCAUAAG", "nts_long": "///b/2294,///b/2295,///b/2296,///b/2320,///b/2321,///b/2322,///b/2331,///b/2332,///b/2333,///b/2334,///b/2335,///b/2336", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///b/2295" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2321" }, { "index": 3, "num_nts": 4, "nts_short": "AUAA", "nts_long": "///b/2332,///b/2333,///b/2334,///b/2335" } ] }, { "index": 5, "type": "3-way junction", "bridging_nts": [ 4, 1, 2 ], "stem_indices": [ 80, 81, 106 ], "summary": "[3] 4 1 2 [b.1297 b.1641 b.1302 b.1624 b.1626 b.1638] 4 4 4", "num_nts": 13, "nts_short": "CGGAAGCAGCAAG", "nts_long": "///b/1297,///b/1298,///b/1299,///b/1300,///b/1301,///b/1302,///b/1624,///b/1625,///b/1626,///b/1638,///b/1639,///b/1640,///b/1641", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GGAA", "nts_long": "///b/1298,///b/1299,///b/1300,///b/1301" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/1625" }, { "index": 3, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/1639,///b/1640" } ] }, { "index": 6, "type": "3-way junction", "bridging_nts": [ 0, 5, 3 ], "stem_indices": [ 15, 16, 18 ], "summary": "[3] 0 5 3 [b.56 b.114 b.57 b.70 b.76 b.110] 3 3 6", "num_nts": 14, "nts_short": "ACGAUAAGCGAUUU", "nts_long": "///b/56,///b/57,///b/70,///b/71,///b/72,///b/73,///b/74,///b/75,///b/76,///b/110,///b/111,///b/112,///b/113,///b/114", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 5, "nts_short": "AUAAG", "nts_long": "///b/71,///b/72,///b/73,///b/74,///b/75" }, { "index": 3, "num_nts": 3, "nts_short": "AUU", "nts_long": "///b/111,///b/112,///b/113" } ] }, { "index": 7, "type": "3-way junction", "bridging_nts": [ 5, 1, 2 ], "stem_indices": [ 48, 49, -19 ], "summary": "[3] 5 1 2 [b.682 b.793 b.688 b.772 b.774 b.790] 6 9 1", "num_nts": 14, "nts_short": "UGAUCUAUGGCAAA", "nts_long": "///b/682,///b/683,///b/684,///b/685,///b/686,///b/687,///b/688,///b/772,///b/773,///b/774,///b/790,///b/791,///b/792,///b/793", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAUCU", "nts_long": "///b/683,///b/684,///b/685,///b/686,///b/687" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///b/773" }, { "index": 3, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/791,///b/792" } ] }, { "index": 8, "type": "3-way junction", "bridging_nts": [ 2, 5, 1 ], "stem_indices": [ 81, 82, 105 ], "summary": "[3] 2 5 1 [b.1305 b.1621 b.1308 b.1604 b.1610 b.1619] 4 2 2", "num_nts": 14, "nts_short": "CAAGCCCAAACGUG", "nts_long": "///b/1305,///b/1306,///b/1307,///b/1308,///b/1604,///b/1605,///b/1606,///b/1607,///b/1608,///b/1609,///b/1610,///b/1619,///b/1620,///b/1621", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/1306,///b/1307" }, { "index": 2, "num_nts": 5, "nts_short": "CCAAA", "nts_long": "///b/1605,///b/1606,///b/1607,///b/1608,///b/1609" }, { "index": 3, "num_nts": 1, "nts_short": "U", "nts_long": "///b/1620" } ] }, { "index": 9, "type": "3-way junction", "bridging_nts": [ 1, 3, 4 ], "stem_indices": [ 137, 138, 139 ], "summary": "[3] 1 3 4 [b.2090 b.2227 b.2092 b.2195 b.2199 b.2222] 5 11 3", "num_nts": 14, "nts_short": "CUGCUAACGGACAG", "nts_long": "///b/2090,///b/2091,///b/2092,///b/2195,///b/2196,///b/2197,///b/2198,///b/2199,///b/2222,///b/2223,///b/2224,///b/2225,///b/2226,///b/2227", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///b/2091" }, { "index": 2, "num_nts": 3, "nts_short": "UAA", "nts_long": "///b/2196,///b/2197,///b/2198" }, { "index": 3, "num_nts": 4, "nts_short": "GACA", "nts_long": "///b/2223,///b/2224,///b/2225,///b/2226" } ] }, { "index": 10, "type": "3-way junction", "bridging_nts": [ 5, 1, 3 ], "stem_indices": [ 1, 2, 6 ], "summary": "[3] 5 1 3 [a.10 a.110 a.16 a.68 a.70 a.106] 9 2 2", "num_nts": 15, "nts_short": "GCCGUAGCGCGGAAC", "nts_long": "///a/10,///a/11,///a/12,///a/13,///a/14,///a/15,///a/16,///a/68,///a/69,///a/70,///a/106,///a/107,///a/108,///a/109,///a/110", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "CCGUA", "nts_long": "///a/11,///a/12,///a/13,///a/14,///a/15" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///a/69" }, { "index": 3, "num_nts": 3, "nts_short": "GAA", "nts_long": "///a/107,///a/108,///a/109" } ] }, { "index": 11, "type": "3-way junction", "bridging_nts": [ 4, 0, 5 ], "stem_indices": [ 93, 94, -39 ], "summary": "[3] 4 0 5 [b.1423 b.1573 b.1428 b.1563 b.1564 b.1567] 4 4 1", "num_nts": 15, "nts_short": "GGGACGCCGAAAAGC", "nts_long": "///b/1423,///b/1424,///b/1425,///b/1426,///b/1427,///b/1428,///b/1563,///b/1564,///b/1567,///b/1568,///b/1569,///b/1570,///b/1571,///b/1572,///b/1573", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GGAC", "nts_long": "///b/1424,///b/1425,///b/1426,///b/1427" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 5, "nts_short": "AAAAG", "nts_long": "///b/1568,///b/1569,///b/1570,///b/1571,///b/1572" } ] }, { "index": 12, "type": "3-way junction", "bridging_nts": [ 2, 4, 5 ], "stem_indices": [ 175, 176, 177 ], "summary": "[3] 2 4 5 [b.2811 b.2887 b.2814 b.2830 b.2835 b.2881] 2 5 3", "num_nts": 17, "nts_short": "GAACGUUGAUAAUGAAC", "nts_long": "///b/2811,///b/2812,///b/2813,///b/2814,///b/2830,///b/2831,///b/2832,///b/2833,///b/2834,///b/2835,///b/2881,///b/2882,///b/2883,///b/2884,///b/2885,///b/2886,///b/2887", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/2812,///b/2813" }, { "index": 2, "num_nts": 4, "nts_short": "UUGA", "nts_long": "///b/2831,///b/2832,///b/2833,///b/2834" }, { "index": 3, "num_nts": 5, "nts_short": "AUGAA", "nts_long": "///b/2882,///b/2883,///b/2884,///b/2885,///b/2886" } ] }, { "index": 13, "type": "3-way junction", "bridging_nts": [ 2, 4, 8 ], "stem_indices": [ 159, 160, 162 ], "summary": "[3] 2 4 8 [b.2516 b.2566 b.2519 b.2544 b.2549 b.2557] 5 3 2", "num_nts": 20, "nts_short": "CAUCGUGAUGCCAUUUAAAG", "nts_long": "///b/2516,///b/2517,///b/2518,///b/2519,///b/2544,///b/2545,///b/2546,///b/2547,///b/2548,///b/2549,///b/2557,///b/2558,///b/2559,///b/2560,///b/2561,///b/2562,///b/2563,///b/2564,///b/2565,///b/2566", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AU", "nts_long": "///b/2517,///b/2518" }, { "index": 2, "num_nts": 4, "nts_short": "UGAU", "nts_long": "///b/2545,///b/2546,///b/2547,///b/2548" }, { "index": 3, "num_nts": 8, "nts_short": "CAUUUAAA", "nts_long": "///b/2558,///b/2559,///b/2560,///b/2561,///b/2562,///b/2563,///b/2564,///b/2565" } ] }, { "index": 14, "type": "3-way junction", "bridging_nts": [ 2, 15, 4 ], "stem_indices": [ 10, 11, 37 ], "summary": "[3] 2 15 4 [b.32 b.473 b.35 b.445 b.461 b.468] 2 2 2", "num_nts": 27, "nts_short": "CCUGCGAUAGUGAACCAGUACGGAAAG", "nts_long": "///b/32,///b/33,///b/34,///b/35,///b/445,///b/446,///b/447,///b/448,///b/449,///b/450,///b/451,///b/452,///b/453,///b/454,///b/455,///b/456,///b/457,///b/458,///b/459,///b/460,///b/461,///b/468,///b/469,///b/470,///b/471,///b/472,///b/473", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "CU", "nts_long": "///b/33,///b/34" }, { "index": 2, "num_nts": 15, "nts_short": "GAUAGUGAACCAGUA", "nts_long": "///b/446,///b/447,///b/448,///b/449,///b/450,///b/451,///b/452,///b/453,///b/454,///b/455,///b/456,///b/457,///b/458,///b/459,///b/460" }, { "index": 3, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///b/469,///b/470,///b/471,///b/472" } ] }, { "index": 15, "type": "3-way junction", "bridging_nts": [ 6, 10, 5 ], "stem_indices": [ 73, -28, -30 ], "summary": "[3] 6 10 5 [b.1051 b.1106 b.1058 b.1078 b.1089 b.1100] 2 1 1", "num_nts": 27, "nts_short": "CCAGGAUGCAUUUAAAGAAAUCACUGG", "nts_long": "///b/1051,///b/1052,///b/1053,///b/1054,///b/1055,///b/1056,///b/1057,///b/1058,///b/1078,///b/1079,///b/1080,///b/1081,///b/1082,///b/1083,///b/1084,///b/1085,///b/1086,///b/1087,///b/1088,///b/1089,///b/1100,///b/1101,///b/1102,///b/1103,///b/1104,///b/1105,///b/1106", "num_stems": 3, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "CAGGAU", "nts_long": "///b/1052,///b/1053,///b/1054,///b/1055,///b/1056,///b/1057" }, { "index": 2, "num_nts": 10, "nts_short": "AUUUAAAGAA", "nts_long": "///b/1079,///b/1080,///b/1081,///b/1082,///b/1083,///b/1084,///b/1085,///b/1086,///b/1087,///b/1088" }, { "index": 3, "num_nts": 5, "nts_short": "CACUG", "nts_long": "///b/1101,///b/1102,///b/1103,///b/1104,///b/1105" } ] }, { "index": 16, "type": "4-way junction", "bridging_nts": [ 0, 0, 0, 0 ], "stem_indices": [ 96, 97, 99, -38 ], "summary": "[4] 0 0 0 0 [b.1443 b.1546 b.1444 b.1465 b.1466 b.1524 b.1525 b.1545] 5 6 2 1", "num_nts": 8, "nts_short": "GGUUACGC", "nts_long": "///b/1443,///b/1444,///b/1465,///b/1466,///b/1524,///b/1525,///b/1545,///b/1546", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 17, "type": "4-way junction", "bridging_nts": [ 0, 0, 0, 0 ], "stem_indices": [ -53, 144, 148, 147 ], "summary": "[4] 0 0 0 0 [b.2282 b.2324 b.2283 b.2383 b.2384 b.2329 b.2330 b.2323] 1 2 3 2", "num_nts": 8, "nts_short": "CAUCGGUG", "nts_long": "///b/2282,///b/2283,///b/2383,///b/2384,///b/2329,///b/2330,///b/2323,///b/2324", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 18, "type": "4-way junction", "bridging_nts": [ 1, 1, 0, 1 ], "stem_indices": [ 16, -3, 19, 17 ], "summary": "[4] 1 1 0 1 [b.59 b.68 b.61 b.93 b.95 b.87 b.88 b.66] 3 1 3 2", "num_nts": 11, "nts_short": "UGCGAAUGCUG", "nts_long": "///b/59,///b/60,///b/61,///b/93,///b/94,///b/95,///b/87,///b/88,///b/66,///b/67,///b/68", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "G", "nts_long": "///b/60" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/94" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 1, "nts_short": "U", "nts_long": "///b/67" } ] }, { "index": 19, "type": "4-way junction", "bridging_nts": [ 3, 1, 0, 1 ], "stem_indices": [ -36, 98, 171, 98 ], "summary": "[4] 3 1 0 1 [b.1450 b.1458 b.1454 b.2703 b.2705 b.2700 b.2701 b.1456] 1 3 6 3", "is_repeated": true, "num_nts": 13, "nts_short": "CGACGCAAUGUUG", "nts_long": "///b/1450,///b/1451,///b/1452,///b/1453,///b/1454,///b/2703,///b/2704,///b/2705,///b/2700,///b/2701,///b/1456,///b/1457,///b/1458", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAC", "nts_long": "///b/1451,///b/1452,///b/1453" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2704" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 1, "nts_short": "U", "nts_long": "///b/1457" } ] }, { "index": 20, "type": "4-way junction", "bridging_nts": [ 2, 2, 2, 0 ], "stem_indices": [ 35, 36, 153, 36 ], "summary": "[4] 2 2 2 0 [b.410 b.417 b.413 b.2409 b.2412 b.2403 b.2406 b.416] 5 4 2 4", "is_repeated": true, "num_nts": 14, "nts_short": "GGACGAAGUGAAUC", "nts_long": "///b/410,///b/411,///b/412,///b/413,///b/2409,///b/2410,///b/2411,///b/2412,///b/2403,///b/2404,///b/2405,///b/2406,///b/416,///b/417", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/411,///b/412" }, { "index": 2, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/2410,///b/2411" }, { "index": 3, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/2404,///b/2405" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 21, "type": "4-way junction", "bridging_nts": [ 5, 0, 2, 0 ], "stem_indices": [ 78, 79, 80, 107 ], "summary": "[4] 5 0 2 0 [b.1269 b.2009 b.1275 b.1293 b.1294 b.1644 b.1647 b.2008] 2 6 4 4", "num_nts": 15, "nts_short": "CGAUAAAUCGCUUAG", "nts_long": "///b/1269,///b/1270,///b/1271,///b/1272,///b/1273,///b/1274,///b/1275,///b/1293,///b/1294,///b/1644,///b/1645,///b/1646,///b/1647,///b/2008,///b/2009", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 5, "nts_short": "GAUAA", "nts_long": "///b/1270,///b/1271,///b/1272,///b/1273,///b/1274" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 2, "nts_short": "CU", "nts_long": "///b/1645,///b/1646" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 22, "type": "4-way junction", "bridging_nts": [ 2, 1, 3, 1 ], "stem_indices": [ 166, 167, 168, 172 ], "summary": "[4] 2 1 3 1 [b.2642 b.2770 b.2645 b.2673 b.2675 b.2730 b.2734 b.2768] 4 7 5 3", "num_nts": 15, "nts_short": "GGGCGACGGAAGUGC", "nts_long": "///b/2642,///b/2643,///b/2644,///b/2645,///b/2673,///b/2674,///b/2675,///b/2730,///b/2731,///b/2732,///b/2733,///b/2734,///b/2768,///b/2769,///b/2770", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "GG", "nts_long": "///b/2643,///b/2644" }, { "index": 2, "num_nts": 1, "nts_short": "A", "nts_long": "///b/2674" }, { "index": 3, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/2731,///b/2732,///b/2733" }, { "index": 4, "num_nts": 1, "nts_short": "G", "nts_long": "///b/2769" } ] }, { "index": 23, "type": "4-way junction", "bridging_nts": [ 3, 3, 1, 1 ], "stem_indices": [ 144, 145, 149, 151 ], "summary": "[4] 3 3 1 1 [b.2284 b.2382 b.2288 b.2342 b.2346 b.2369 b.2371 b.2380] 2 7 4 3", "num_nts": 16, "nts_short": "CGAAGUUGACGGUAGG", "nts_long": "///b/2284,///b/2285,///b/2286,///b/2287,///b/2288,///b/2342,///b/2343,///b/2344,///b/2345,///b/2346,///b/2369,///b/2370,///b/2371,///b/2380,///b/2381,///b/2382", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/2285,///b/2286,///b/2287" }, { "index": 2, "num_nts": 3, "nts_short": "UGA", "nts_long": "///b/2343,///b/2344,///b/2345" }, { "index": 3, "num_nts": 1, "nts_short": "G", "nts_long": "///b/2370" }, { "index": 4, "num_nts": 1, "nts_short": "G", "nts_long": "///b/2381" } ] }, { "index": 24, "type": "4-way junction", "bridging_nts": [ 0, 0, 5, 5 ], "stem_indices": [ -52, -53, -55, 152 ], "summary": "[4] 0 0 5 5 [b.2281 b.2426 b.2282 b.2324 b.2325 b.2388 b.2394 b.2420] 1 1 1 7", "num_nts": 18, "nts_short": "GCGCGUGAUCCGCUCAAC", "nts_long": "///b/2281,///b/2282,///b/2324,///b/2325,///b/2388,///b/2389,///b/2390,///b/2391,///b/2392,///b/2393,///b/2394,///b/2420,///b/2421,///b/2422,///b/2423,///b/2424,///b/2425,///b/2426", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 5, "nts_short": "UGAUC", "nts_long": "///b/2389,///b/2390,///b/2391,///b/2392,///b/2393" }, { "index": 4, "num_nts": 5, "nts_short": "CUCAA", "nts_long": "///b/2421,///b/2422,///b/2423,///b/2424,///b/2425" } ] }, { "index": 25, "type": "4-way junction", "bridging_nts": [ 3, 2, 5, 0 ], "stem_indices": [ 181, 182, 183, 184 ], "summary": "[4] 3 2 5 0 [v.7 v.66 v.11 v.24 v.27 v.43 v.49 v.65] 5 3 4 5", "num_nts": 18, "nts_short": "UUGGCGCACGGGGUCGUA", "nts_long": "///v/7,///v/8,///v/9,///v/10,///v/11,///v/24,///v/25,///v/26,///v/27,///v/43,///v/44,///v/45,///v/46,///v/47,///v/48,///v/49,///v/65,///v/66", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "UGG", "nts_long": "///v/8,///v/9,///v/10" }, { "index": 2, "num_nts": 2, "nts_short": "CA", "nts_long": "///v/25,///v/26" }, { "index": 3, "num_nts": 5, "nts_short": "GGGUC", "nts_long": "///v/44,///v/45,///v/46,///v/47,///v/48" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 26, "type": "4-way junction", "bridging_nts": [ 0, 4, 6, 2 ], "stem_indices": [ 27, -7, 34, 35 ], "summary": "[4] 0 4 6 2 [b.268 b.424 b.269 b.370 b.375 b.399 b.406 b.421] 3 1 8 5", "num_nts": 20, "nts_short": "CCGAGUAGUGAAUAUGCAAG", "nts_long": "///b/268,///b/269,///b/370,///b/371,///b/372,///b/373,///b/374,///b/375,///b/399,///b/400,///b/401,///b/402,///b/403,///b/404,///b/405,///b/406,///b/421,///b/422,///b/423,///b/424", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 4, "nts_short": "AGUA", "nts_long": "///b/371,///b/372,///b/373,///b/374" }, { "index": 3, "num_nts": 6, "nts_short": "GAAUAU", "nts_long": "///b/400,///b/401,///b/402,///b/403,///b/404,///b/405" }, { "index": 4, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/422,///b/423" } ] }, { "index": 27, "type": "4-way junction", "bridging_nts": [ 2, 3, 2, 5 ], "stem_indices": [ 42, 43, 45, 46 ], "summary": "[4] 2 3 2 5 [b.600 b.655 b.603 b.623 b.627 b.634 b.637 b.649] 13 3 2 4", "num_nts": 20, "nts_short": "CAAGCGAAGCGAGCGUUAAG", "nts_long": "///b/600,///b/601,///b/602,///b/603,///b/623,///b/624,///b/625,///b/626,///b/627,///b/634,///b/635,///b/636,///b/637,///b/649,///b/650,///b/651,///b/652,///b/653,///b/654,///b/655", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/601,///b/602" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/624,///b/625,///b/626" }, { "index": 3, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/635,///b/636" }, { "index": 4, "num_nts": 5, "nts_short": "GUUAA", "nts_long": "///b/650,///b/651,///b/652,///b/653,///b/654" } ] }, { "index": 28, "type": "4-way junction", "bridging_nts": [ 1, 0, 8, 4 ], "stem_indices": [ 119, 120, 126, -47 ], "summary": "[4] 1 0 8 4 [b.1832 b.1971 b.1834 b.1904 b.1905 b.1923 b.1932 b.1966] 4 3 5 1", "num_nts": 21, "nts_short": "CUGCGCCUAAGGUAGCGAAUG", "nts_long": "///b/1832,///b/1833,///b/1834,///b/1904,///b/1905,///b/1923,///b/1924,///b/1925,///b/1926,///b/1927,///b/1928,///b/1929,///b/1930,///b/1931,///b/1932,///b/1966,///b/1967,///b/1968,///b/1969,///b/1970,///b/1971", "num_stems": 4, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "U", "nts_long": "///b/1833" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 8, "nts_short": "CUAAGGUA", "nts_long": "///b/1924,///b/1925,///b/1926,///b/1927,///b/1928,///b/1929,///b/1930,///b/1931" }, { "index": 4, "num_nts": 4, "nts_short": "GAAU", "nts_long": "///b/1967,///b/1968,///b/1969,///b/1970" } ] }, { "index": 29, "type": "5-way junction", "bridging_nts": [ 6, 4, 0, 1, 1 ], "stem_indices": [ 14, 15, 20, 21, 22 ], "summary": "[5] 6 4 0 1 1 [b.47 b.178 b.54 b.116 b.121 b.130 b.131 b.148 b.150 b.176] 2 3 3 7 9", "num_nts": 22, "nts_short": "CGAUGAAGCGAAUGCAUAUAGG", "nts_long": "///b/47,///b/48,///b/49,///b/50,///b/51,///b/52,///b/53,///b/54,///b/116,///b/117,///b/118,///b/119,///b/120,///b/121,///b/130,///b/131,///b/148,///b/149,///b/150,///b/176,///b/177,///b/178", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "GAUGAA", "nts_long": "///b/48,///b/49,///b/50,///b/51,///b/52,///b/53" }, { "index": 2, "num_nts": 4, "nts_short": "GAAU", "nts_long": "///b/117,///b/118,///b/119,///b/120" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 1, "nts_short": "A", "nts_long": "///b/149" }, { "index": 5, "num_nts": 1, "nts_short": "G", "nts_long": "///b/177" } ] }, { "index": 30, "type": "5-way junction", "bridging_nts": [ 4, 2, 2, 0, 5 ], "stem_indices": [ 41, 42, 47, 55, -32 ], "summary": "[5] 4 2 2 0 5 [b.583 b.1255 b.588 b.667 b.670 b.808 b.811 b.1194 b.1195 b.1249] 6 13 2 6 1", "num_nts": 23, "nts_short": "CGACUUAGACGUUCGCGCGAAUG", "nts_long": "///b/583,///b/584,///b/585,///b/586,///b/587,///b/588,///b/667,///b/668,///b/669,///b/670,///b/808,///b/809,///b/810,///b/811,///b/1194,///b/1195,///b/1249,///b/1250,///b/1251,///b/1252,///b/1253,///b/1254,///b/1255", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GACU", "nts_long": "///b/584,///b/585,///b/586,///b/587" }, { "index": 2, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/668,///b/669" }, { "index": 3, "num_nts": 2, "nts_short": "UU", "nts_long": "///b/809,///b/810" }, { "index": 4, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 5, "num_nts": 5, "nts_short": "CGAAU", "nts_long": "///b/1250,///b/1251,///b/1252,///b/1253,///b/1254" } ] }, { "index": 31, "type": "5-way junction", "bridging_nts": [ 7, 0, 0, 7, 1 ], "stem_indices": [ -41, 110, 111, -46, 114 ], "summary": "[5] 7 0 0 7 1 [b.1673 b.1989 b.1681 b.1705 b.1706 b.1750 b.1751 b.1755 b.1763 b.1987] 1 5 6 1 7", "num_nts": 25, "nts_short": "GCAAAAUGGCGUCGAUACCAGCGGC", "nts_long": "///b/1673,///b/1674,///b/1675,///b/1676,///b/1677,///b/1678,///b/1679,///b/1680,///b/1681,///b/1705,///b/1706,///b/1750,///b/1751,///b/1755,///b/1756,///b/1757,///b/1758,///b/1759,///b/1760,///b/1761,///b/1762,///b/1763,///b/1987,///b/1988,///b/1989", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 7, "nts_short": "CAAAAUG", "nts_long": "///b/1674,///b/1675,///b/1676,///b/1677,///b/1678,///b/1679,///b/1680" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 7, "nts_short": "AUACCAG", "nts_long": "///b/1756,///b/1757,///b/1758,///b/1759,///b/1760,///b/1761,///b/1762" }, { "index": 5, "num_nts": 1, "nts_short": "G", "nts_long": "///b/1988" } ] }, { "index": 32, "type": "5-way junction", "bridging_nts": [ 6, 6, 5, 4, 4 ], "stem_indices": [ 131, 132, -57, 157, 163 ], "summary": "[5] 6 6 5 4 4 [b.2056 b.2610 b.2063 b.2445 b.2452 b.2499 b.2505 b.2582 b.2587 b.2605] 2 4 1 2 4", "num_nts": 35, "nts_short": "GAAAGACCGGAUAACAUCGAUGUGUUUAGCGGUCC", "nts_long": "///b/2056,///b/2057,///b/2058,///b/2059,///b/2060,///b/2061,///b/2062,///b/2063,///b/2445,///b/2446,///b/2447,///b/2448,///b/2449,///b/2450,///b/2451,///b/2452,///b/2499,///b/2500,///b/2501,///b/2502,///b/2503,///b/2504,///b/2505,///b/2582,///b/2583,///b/2584,///b/2585,///b/2586,///b/2587,///b/2605,///b/2606,///b/2607,///b/2608,///b/2609,///b/2610", "num_stems": 5, "bridges": [ { "index": 1, "num_nts": 6, "nts_short": "AAAGAC", "nts_long": "///b/2057,///b/2058,///b/2059,///b/2060,///b/2061,///b/2062" }, { "index": 2, "num_nts": 6, "nts_short": "GAUAAC", "nts_long": "///b/2446,///b/2447,///b/2448,///b/2449,///b/2450,///b/2451" }, { "index": 3, "num_nts": 5, "nts_short": "CGAUG", "nts_long": "///b/2500,///b/2501,///b/2502,///b/2503,///b/2504" }, { "index": 4, "num_nts": 4, "nts_short": "UUUA", "nts_long": "///b/2583,///b/2584,///b/2585,///b/2586" }, { "index": 5, "num_nts": 4, "nts_short": "GGUC", "nts_long": "///b/2606,///b/2607,///b/2608,///b/2609" } ] }, { "index": 33, "type": "6-way junction", "bridging_nts": [ 1, 1, 0, 2, 1, 5 ], "stem_indices": [ -12, -13, 41, -33, -49, 128 ], "summary": "[6] 1 1 0 2 1 5 [b.561 b.2032 b.563 b.576 b.578 b.1260 b.1261 b.2016 b.2019 b.2033 b.2035 b.2026] 1 1 6 1 1 5", "num_nts": 22, "nts_short": "UACGGGCAUGAAUGCGUGAAGA", "nts_long": "///b/561,///b/562,///b/563,///b/576,///b/577,///b/578,///b/1260,///b/1261,///b/2016,///b/2017,///b/2018,///b/2019,///b/2033,///b/2034,///b/2035,///b/2026,///b/2027,///b/2028,///b/2029,///b/2030,///b/2031,///b/2032", "num_stems": 6, "bridges": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///b/562" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///b/577" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/2017,///b/2018" }, { "index": 5, "num_nts": 1, "nts_short": "G", "nts_long": "///b/2034" }, { "index": 6, "num_nts": 5, "nts_short": "UGAAG", "nts_long": "///b/2027,///b/2028,///b/2029,///b/2030,///b/2031" } ] }, { "index": 34, "type": "6-way junction", "bridging_nts": [ 0, 1, 5, 11, 3, 0 ], "stem_indices": [ 68, 69, -25, 71, 69, -24 ], "summary": "[6] 0 1 5 11 3 0 [b.1003 b.1150 b.1004 b.1137 b.1139 b.1023 b.1029 b.1123 b.1135 b.1006 b.1010 b.1149] 3 3 1 2 3 1", "is_repeated": true, "num_nts": 32, "nts_short": "UCGGCGGGAAACGGAAGAUGUAACGCAAAGCA", "nts_long": "///b/1003,///b/1004,///b/1137,///b/1138,///b/1139,///b/1023,///b/1024,///b/1025,///b/1026,///b/1027,///b/1028,///b/1029,///b/1123,///b/1124,///b/1125,///b/1126,///b/1127,///b/1128,///b/1129,///b/1130,///b/1131,///b/1132,///b/1133,///b/1134,///b/1135,///b/1006,///b/1007,///b/1008,///b/1009,///b/1010,///b/1149,///b/1150", "num_stems": 6, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///b/1138" }, { "index": 3, "num_nts": 5, "nts_short": "GGAAA", "nts_long": "///b/1024,///b/1025,///b/1026,///b/1027,///b/1028" }, { "index": 4, "num_nts": 11, "nts_short": "GAAGAUGUAAC", "nts_long": "///b/1124,///b/1125,///b/1126,///b/1127,///b/1128,///b/1129,///b/1130,///b/1131,///b/1132,///b/1133,///b/1134" }, { "index": 5, "num_nts": 3, "nts_short": "AAA", "nts_long": "///b/1007,///b/1008,///b/1009" }, { "index": 6, "num_nts": 0, "nts_short": "", "nts_long": "" } ] }, { "index": 35, "type": "6-way junction", "bridging_nts": [ 0, 3, 9, 3, 3, 6 ], "stem_indices": [ 13, 14, -4, 24, 25, 27 ], "summary": "[6] 0 3 9 3 3 6 [b.45 b.433 b.46 b.179 b.183 b.214 b.224 b.231 b.235 b.262 b.266 b.426] 2 2 1 2 5 3", "num_nts": 36, "nts_short": "GGCGAACGGAAAAGAAAUAGAUUAGCAGCUAAAUAC", "nts_long": "///b/45,///b/46,///b/179,///b/180,///b/181,///b/182,///b/183,///b/214,///b/215,///b/216,///b/217,///b/218,///b/219,///b/220,///b/221,///b/222,///b/223,///b/224,///b/231,///b/232,///b/233,///b/234,///b/235,///b/262,///b/263,///b/264,///b/265,///b/266,///b/426,///b/427,///b/428,///b/429,///b/430,///b/431,///b/432,///b/433", "num_stems": 6, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/180,///b/181,///b/182" }, { "index": 3, "num_nts": 9, "nts_short": "GAAAAGAAA", "nts_long": "///b/215,///b/216,///b/217,///b/218,///b/219,///b/220,///b/221,///b/222,///b/223" }, { "index": 4, "num_nts": 3, "nts_short": "GAU", "nts_long": "///b/232,///b/233,///b/234" }, { "index": 5, "num_nts": 3, "nts_short": "GCA", "nts_long": "///b/263,///b/264,///b/265" }, { "index": 6, "num_nts": 6, "nts_short": "UAAAUA", "nts_long": "///b/427,///b/428,///b/429,///b/430,///b/431,///b/432" } ] }, { "index": 36, "type": "7-way junction", "bridging_nts": [ 3, 0, 0, 5, 0, 1, 3 ], "stem_indices": [ 30, 31, 32, 33, 32, -8, 33 ], "summary": "[7] 3 0 0 5 0 1 3 [b.297 b.341 b.301 b.316 b.317 b.334 b.335 b.327 b.333 b.318 b.319 b.323 b.325 b.337] 3 5 2 3 2 1 3", "is_repeated": true, "num_nts": 26, "nts_short": "GGAAGCGCCGUGACAGCGCAGCGUAC", "nts_long": "///b/297,///b/298,///b/299,///b/300,///b/301,///b/316,///b/317,///b/334,///b/335,///b/327,///b/328,///b/329,///b/330,///b/331,///b/332,///b/333,///b/318,///b/319,///b/323,///b/324,///b/325,///b/337,///b/338,///b/339,///b/340,///b/341", "num_stems": 7, "bridges": [ { "index": 1, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/298,///b/299,///b/300" }, { "index": 2, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 5, "nts_short": "UGACA", "nts_long": "///b/328,///b/329,///b/330,///b/331,///b/332" }, { "index": 5, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 6, "num_nts": 1, "nts_short": "A", "nts_long": "///b/324" }, { "index": 7, "num_nts": 3, "nts_short": "GUA", "nts_long": "///b/338,///b/339,///b/340" } ] }, { "index": 37, "type": "7-way junction", "bridging_nts": [ 4, 1, 3, 4, 3, 0, 4 ], "stem_indices": [ 55, 56, -20, 64, 65, 66, 74 ], "summary": "[7] 4 1 3 4 3 0 4 [b.816 b.1189 b.821 b.834 b.836 b.941 b.945 b.970 b.975 b.986 b.990 b.1162 b.1163 b.1184] 6 5 1 10 3 4 7", "num_nts": 33, "nts_short": "CGAAAGCGCGACACGAAGAGCAGACGCGGGUAG", "nts_long": "///b/816,///b/817,///b/818,///b/819,///b/820,///b/821,///b/834,///b/835,///b/836,///b/941,///b/942,///b/943,///b/944,///b/945,///b/970,///b/971,///b/972,///b/973,///b/974,///b/975,///b/986,///b/987,///b/988,///b/989,///b/990,///b/1162,///b/1163,///b/1184,///b/1185,///b/1186,///b/1187,///b/1188,///b/1189", "num_stems": 7, "bridges": [ { "index": 1, "num_nts": 4, "nts_short": "GAAA", "nts_long": "///b/817,///b/818,///b/819,///b/820" }, { "index": 2, "num_nts": 1, "nts_short": "G", "nts_long": "///b/835" }, { "index": 3, "num_nts": 3, "nts_short": "ACA", "nts_long": "///b/942,///b/943,///b/944" }, { "index": 4, "num_nts": 4, "nts_short": "AAGA", "nts_long": "///b/971,///b/972,///b/973,///b/974" }, { "index": 5, "num_nts": 3, "nts_short": "AGA", "nts_long": "///b/987,///b/988,///b/989" }, { "index": 6, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 7, "num_nts": 4, "nts_short": "GGUA", "nts_long": "///b/1185,///b/1186,///b/1187,///b/1188" } ] }, { "index": 38, "type": "9-way junction", "bridging_nts": [ 0, 4, 0, 1, 2, 3, 0, 0, 1 ], "stem_indices": [ -34, 83, 85, 91, 86, 87, 90, 85, 86 ], "summary": "[9] 0 4 0 1 2 3 0 0 1 [b.1312 b.1602 b.1313 b.1337 b.1342 b.1403 b.1404 b.1596 b.1598 b.1346 b.1349 b.1380 b.1384 b.1401 b.1402 b.1343 b.1344 b.1600] 1 6 2 11 3 2 5 2 3", "is_repeated": true, "num_nts": 29, "nts_short": "UCGGUGAGCUAAUACCCGGAAAUAUCGUA", "nts_long": "///b/1312,///b/1313,///b/1337,///b/1338,///b/1339,///b/1340,///b/1341,///b/1342,///b/1403,///b/1404,///b/1596,///b/1597,///b/1598,///b/1346,///b/1347,///b/1348,///b/1349,///b/1380,///b/1381,///b/1382,///b/1383,///b/1384,///b/1401,///b/1402,///b/1343,///b/1344,///b/1600,///b/1601,///b/1602", "num_stems": 9, "bridges": [ { "index": 1, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 2, "num_nts": 4, "nts_short": "GUGA", "nts_long": "///b/1338,///b/1339,///b/1340,///b/1341" }, { "index": 3, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 4, "num_nts": 1, "nts_short": "A", "nts_long": "///b/1597" }, { "index": 5, "num_nts": 2, "nts_short": "CC", "nts_long": "///b/1347,///b/1348" }, { "index": 6, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/1381,///b/1382,///b/1383" }, { "index": 7, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 8, "num_nts": 0, "nts_short": "", "nts_long": "" }, { "index": 9, "num_nts": 1, "nts_short": "U", "nts_long": "///b/1601" } ] } ], "num_ssSegments": 20, "ssSegments": [ { "index": 1, "num_nts": 1, "nts_short": "A", "nts_long": "///a/119" }, { "index": 2, "num_nts": 6, "nts_short": "GACUAA", "nts_long": "///b/9,///b/10,///b/11,///b/12,///b/13,///b/14" }, { "index": 3, "num_nts": 5, "nts_short": "ACAAG", "nts_long": "///b/526,///b/527,///b/528,///b/529,///b/530" }, { "index": 4, "num_nts": 1, "nts_short": "A", "nts_long": "///b/532" }, { "index": 5, "is_broken": true, "num_nts": 3, "nts_short": "UUG", "nts_long": "///b/545,///b/546,///b/547" }, { "index": 6, "num_nts": 1, "nts_short": "G", "nts_long": "///b/560" }, { "index": 7, "num_nts": 3, "nts_short": "GUA", "nts_long": "///b/1474,///b/1475,///b/1476" }, { "index": 8, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/1513,///b/1514" }, { "index": 9, "num_nts": 1, "nts_short": "A", "nts_long": "///b/1772" }, { "index": 10, "num_nts": 1, "nts_short": "U", "nts_long": "///b/1774" }, { "index": 11, "num_nts": 3, "nts_short": "ACA", "nts_long": "///b/1788,///b/1789,///b/1790" }, { "index": 12, "num_nts": 1, "nts_short": "G", "nts_long": "///b/1827" }, { "index": 13, "num_nts": 3, "nts_short": "UAA", "nts_long": "///b/1975,///b/1976,///b/1977" }, { "index": 14, "num_nts": 2, "nts_short": "UA", "nts_long": "///b/2040,///b/2041" }, { "index": 15, "num_nts": 2, "nts_short": "UU", "nts_long": "///b/2074,///b/2075" }, { "index": 16, "num_nts": 2, "nts_short": "UU", "nts_long": "///b/2243,///b/2244" }, { "index": 17, "num_nts": 6, "nts_short": "GAUAAA", "nts_long": "///b/2428,///b/2429,///b/2430,///b/2431,///b/2432,///b/2433" }, { "index": 18, "num_nts": 3, "nts_short": "GCU", "nts_long": "///b/2626,///b/2627,///b/2628" }, { "index": 19, "num_nts": 1, "nts_short": "A", "nts_long": "///v/73" }, { "index": 20, "num_nts": 1, "nts_short": "A", "nts_long": "///v/76" } ], "num_kissingLoops": 8, "kissingLoops": [ { "index": 1, "stem_index": -66, "is_isoCanonPair": true, "hairpin_indices": [ 75, 77 ] }, { "index": 2, "stem_index": -51, "is_isoCanonPair": true, "hairpin_indices": [ 57, 59 ] }, { "index": 3, "stem_index": -9, "is_isoCanonPair": true, "hairpin_indices": [ 15, 17 ] }, { "index": 4, "stem_index": -6, "is_isoCanonPair": true, "hairpin_indices": [ 9, 11 ] }, { "index": 5, "stem_index": -3, "is_isoCanonPair": true, "hairpin_indices": [ 3, 5 ] }, { "index": 6, "stem_index": 17, "hairpin_indices": [ 3, 5 ] }, { "index": 7, "stem_index": 36, "hairpin_indices": [ 17, 64 ] }, { "index": 8, "stem_index": 98, "hairpin_indices": [ 39, 70 ] } ], "num_Aminors": 151, "Aminors": [ { "index": 1, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///a/53 vs ///a/31,///a/51", "A_nt1": { "desc": "///a/53 vs ///a/31", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.56],N1-O2'(hydroxyl)[2.62]" }, "A_nt2": { "desc": "///a/53 vs ///a/51", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 2, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///a/57 vs ///a/29,///a/55", "A_nt1": { "desc": "///a/57 vs ///a/29", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///a/57 vs ///a/55", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N7-O2'(hydroxyl)[2.85],N6(amino)-O2(carbonyl)[2.85]" } }, { "index": 3, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///a/57 vs ///a/30,///a/54", "A_nt1": { "desc": "///a/57 vs ///a/30", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.12],N1-O2'(hydroxyl)[2.94]" }, "A_nt2": { "desc": "///a/57 vs ///a/54", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 4, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///a/58 vs ///a/29,///a/55", "A_nt1": { "desc": "///a/58 vs ///a/29", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.37],N1-O2'(hydroxyl)[2.81]" }, "A_nt2": { "desc": "///a/58 vs ///a/55", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 5, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///a/59 vs ///a/28,///a/56", "A_nt1": { "desc": "///a/59 vs ///a/28", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///a/59 vs ///a/56", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.50],N1-N2(amino)[3.32]" } }, { "index": 6, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/14 vs ///b/2043,///b/2623", "A_nt1": { "desc": "///b/14 vs ///b/2043", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.91]" }, "A_nt2": { "desc": "///b/14 vs ///b/2623", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 7, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/52 vs ///b/47,///b/178", "A_nt1": { "desc": "///b/52 vs ///b/47", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.05]" }, "A_nt2": { "desc": "///b/52 vs ///b/178", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.99],N3-N2(amino)[3.26]" } }, { "index": 8, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/71 vs ///b/57,///b/70", "A_nt1": { "desc": "///b/71 vs ///b/57", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/71 vs ///b/70", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.14]" } }, { "index": 9, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/73 vs ///b/58,///b/69", "A_nt1": { "desc": "///b/73 vs ///b/58", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.62],N3-N2(amino)[3.02]" }, "A_nt2": { "desc": "///b/73 vs ///b/69", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.86],O2'(hydroxyl)-O2(carbonyl)[2.53]" } }, { "index": 10, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/103 vs ///b/85,///b/97", "A_nt1": { "desc": "///b/103 vs ///b/85", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.07],N3-N2(amino)[3.06]" }, "A_nt2": { "desc": "///b/103 vs ///b/97", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.44]" } }, { "index": 11, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/127 vs ///b/55,///b/115", "A_nt1": { "desc": "///b/127 vs ///b/55", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.72],N3-N2(amino)[3.06]" }, "A_nt2": { "desc": "///b/127 vs ///b/115", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.80],O2'(hydroxyl)-O2(carbonyl)[3.32]" } }, { "index": 12, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///b/160 vs ///b/2207,///b/2215", "A_nt1": { "desc": "///b/160 vs ///b/2207", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.85],N3-O2'(hydroxyl)[2.78]" }, "A_nt2": { "desc": "///b/160 vs ///b/2215", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 13, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/161 vs ///b/2206,///b/2216", "A_nt1": { "desc": "///b/161 vs ///b/2206", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.28]" }, "A_nt2": { "desc": "///b/161 vs ///b/2216", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.68],N3-N2(amino)[3.16]" } }, { "index": 14, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/182 vs ///b/45,///b/433", "A_nt1": { "desc": "///b/182 vs ///b/45", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/182 vs ///b/433", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.79],N3-O2'(hydroxyl)[3.10]" } }, { "index": 15, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/190 vs ///b/677,///b/798", "A_nt1": { "desc": "///b/190 vs ///b/677", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/190 vs ///b/798", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.08]" } }, { "index": 16, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/191 vs ///b/677,///b/798", "A_nt1": { "desc": "///b/191 vs ///b/677", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.52],O2'(hydroxyl)-O2(carbonyl)[2.95]" }, "A_nt2": { "desc": "///b/191 vs ///b/798", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.28]" } }, { "index": 17, "type": "X", "desc_short": "A vs U-G (Wobble)", "desc_long": "///b/196 vs ///b/825,///b/830", "A_nt1": { "desc": "///b/196 vs ///b/825", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/196 vs ///b/830", "face_type": "+", "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.34],N6(amino)-N3[3.32],N1-N2(amino)[3.05]" } }, { "index": 18, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/199 vs ///b/2077,///b/2241", "A_nt1": { "desc": "///b/199 vs ///b/2077", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.04]" }, "A_nt2": { "desc": "///b/199 vs ///b/2241", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "OP1-O2'(hydroxyl)[3.12]" } }, { "index": 19, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/216 vs ///b/183,///b/214", "A_nt1": { "desc": "///b/216 vs ///b/183", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/216 vs ///b/214", "face_type": "-", "hbonds_num": 4, "hbonds_desc": "O3'-O2'(hydroxyl)[2.90],O2'(hydroxyl)-O2'(hydroxyl)[2.63],O2'(hydroxyl)-N3[2.98],N3-N2(amino)[2.91]" } }, { "index": 20, "type": "X", "desc_short": "A vs U-A (WC)", "desc_long": "///b/222 vs ///b/224,///b/231", "A_nt1": { "desc": "///b/222 vs ///b/224", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O4'[3.57]" }, "A_nt2": { "desc": "///b/222 vs ///b/231", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 21, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/223 vs ///b/407,///b/420", "A_nt1": { "desc": "///b/223 vs ///b/407", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.47],N3-N2(amino)[3.12]" }, "A_nt2": { "desc": "///b/223 vs ///b/420", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.61],O2'(hydroxyl)-O2(carbonyl)[2.95]" } }, { "index": 22, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/226 vs ///b/409,///b/418", "A_nt1": { "desc": "///b/226 vs ///b/409", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/226 vs ///b/418", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.94],N1-O2'(hydroxyl)[2.57]" } }, { "index": 23, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/227 vs ///b/410,///b/417", "A_nt1": { "desc": "///b/227 vs ///b/410", "face_type": "+", "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.19],N6(amino)-N3[2.95],N1-N2(amino)[2.90]" }, "A_nt2": { "desc": "///b/227 vs ///b/417", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 24, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/251 vs ///b/194,///b/201", "A_nt1": { "desc": "///b/251 vs ///b/194", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.38],N3-N2(amino)[3.25]" }, "A_nt2": { "desc": "///b/251 vs ///b/201", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.81]" } }, { "index": 25, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/294 vs ///b/80,///b/106", "A_nt1": { "desc": "///b/294 vs ///b/80", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.77],N3-N2(amino)[3.16]" }, "A_nt2": { "desc": "///b/294 vs ///b/106", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.48],O2'(hydroxyl)-O2(carbonyl)[3.19]" } }, { "index": 26, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/299 vs ///b/319,///b/323", "A_nt1": { "desc": "///b/299 vs ///b/319", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.56]" }, "A_nt2": { "desc": "///b/299 vs ///b/323", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 27, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/300 vs ///b/318,///b/333", "A_nt1": { "desc": "///b/300 vs ///b/318", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.79],O2'(hydroxyl)-O2(carbonyl)[2.94]" }, "A_nt2": { "desc": "///b/300 vs ///b/333", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.68],N3-N2(amino)[3.15]" } }, { "index": 28, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/346 vs ///b/79,///b/107", "A_nt1": { "desc": "///b/346 vs ///b/79", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.19]" }, "A_nt2": { "desc": "///b/346 vs ///b/107", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 29, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/384 vs ///b/245,///b/253", "A_nt1": { "desc": "///b/384 vs ///b/245", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.59],N3-N2(amino)[3.47]" }, "A_nt2": { "desc": "///b/384 vs ///b/253", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 30, "type": "X", "desc_short": "A vs A-G (Imino)", "desc_long": "///b/432 vs ///b/182,///b/215", "A_nt1": { "desc": "///b/432 vs ///b/182", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/432 vs ///b/215", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[2.98]" } }, { "index": 31, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/432 vs ///b/183,///b/214", "A_nt1": { "desc": "///b/432 vs ///b/183", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.94],N3-O2'(hydroxyl)[2.56]" }, "A_nt2": { "desc": "///b/432 vs ///b/214", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 32, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/443 vs ///b/1199,///b/1244", "A_nt1": { "desc": "///b/443 vs ///b/1199", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.99]" }, "A_nt2": { "desc": "///b/443 vs ///b/1244", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.94],N3-N2(amino)[3.00]" } }, { "index": 33, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/449 vs ///b/35,///b/445", "A_nt1": { "desc": "///b/449 vs ///b/35", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/449 vs ///b/445", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.71],N3-O2'(hydroxyl)[2.86]" } }, { "index": 34, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/466 vs ///b/681,///b/794", "A_nt1": { "desc": "///b/466 vs ///b/681", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/466 vs ///b/794", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.65]" } }, { "index": 35, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/479 vs ///b/481,///b/509", "A_nt1": { "desc": "///b/479 vs ///b/481", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O4'[3.08]" }, "A_nt2": { "desc": "///b/479 vs ///b/509", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 36, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///b/514 vs ///b/580,///b/1258", "A_nt1": { "desc": "///b/514 vs ///b/580", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.84],N3-O2'(hydroxyl)[2.71]" }, "A_nt2": { "desc": "///b/514 vs ///b/1258", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 37, "type": "I", "desc_short": "A vs U-A (WC)", "desc_long": "///b/515 vs ///b/579,///b/1259", "A_nt1": { "desc": "///b/515 vs ///b/579", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.96],O2'(hydroxyl)-O2(carbonyl)[3.27]" }, "A_nt2": { "desc": "///b/515 vs ///b/1259", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.97]" } }, { "index": 38, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/526 vs ///b/2042,///b/2624", "A_nt1": { "desc": "///b/526 vs ///b/2042", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O3'-O2'(hydroxyl)[3.04],O2'(hydroxyl)-O2'(hydroxyl)[2.75],O2'(hydroxyl)-O2(carbonyl)[2.61]" }, "A_nt2": { "desc": "///b/526 vs ///b/2624", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.93],N3-N2(amino)[3.18]" } }, { "index": 39, "type": "X", "desc_short": "A vs A-G (Imino)", "desc_long": "///b/532 vs ///b/2018,///b/2034", "A_nt1": { "desc": "///b/532 vs ///b/2018", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/532 vs ///b/2034", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[2.99]" } }, { "index": 40, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///b/532 vs ///b/2019,///b/2033", "A_nt1": { "desc": "///b/532 vs ///b/2019", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.29]" }, "A_nt2": { "desc": "///b/532 vs ///b/2033", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 41, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/585 vs ///b/670,///b/808", "A_nt1": { "desc": "///b/585 vs ///b/670", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.69],O2'(hydroxyl)-O2(carbonyl)[2.85]" }, "A_nt2": { "desc": "///b/585 vs ///b/808", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.54],N3-N2(amino)[3.14]" } }, { "index": 42, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///b/607 vs ///b/238,///b/259", "A_nt1": { "desc": "///b/607 vs ///b/238", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.85],N3-O2'(hydroxyl)[2.99]" }, "A_nt2": { "desc": "///b/607 vs ///b/259", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 43, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/608 vs ///b/237,///b/260", "A_nt1": { "desc": "///b/608 vs ///b/237", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.04],O2'(hydroxyl)-O2(carbonyl)[2.98]" }, "A_nt2": { "desc": "///b/608 vs ///b/260", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.48]" } }, { "index": 44, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/620 vs ///b/238,///b/259", "A_nt1": { "desc": "///b/620 vs ///b/238", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/620 vs ///b/259", "face_type": "-", "hbonds_num": 4, "hbonds_desc": "O3'-O2'(hydroxyl)[3.09],O2'(hydroxyl)-O2'(hydroxyl)[2.65],O2'(hydroxyl)-N3[3.09],N3-N2(amino)[3.50]" } }, { "index": 45, "type": "X", "desc_short": "A vs U-G (Wobble)", "desc_long": "///b/630 vs ///b/2400,///b/2414", "A_nt1": { "desc": "///b/630 vs ///b/2400", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/630 vs ///b/2414", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N1-N2(amino)[3.09],N3-O2'(hydroxyl)[2.77]" } }, { "index": 46, "type": "X", "desc_short": "A vs U-A (WC)", "desc_long": "///b/642 vs ///b/2347,///b/2368", "A_nt1": { "desc": "///b/642 vs ///b/2347", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/642 vs ///b/2368", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.09],N6(amino)-N3[3.19]" } }, { "index": 47, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/643 vs ///b/2348,///b/2367", "A_nt1": { "desc": "///b/643 vs ///b/2348", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.03],N1-N2(amino)[3.21]" }, "A_nt2": { "desc": "///b/643 vs ///b/2367", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 48, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/674 vs ///b/2066,///b/2442", "A_nt1": { "desc": "///b/674 vs ///b/2066", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/674 vs ///b/2442", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.01],N3-O2'(hydroxyl)[2.69]" } }, { "index": 49, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/675 vs ///b/2068,///b/2441", "A_nt1": { "desc": "///b/675 vs ///b/2068", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.68],N3-N2(amino)[3.20]" }, "A_nt2": { "desc": "///b/675 vs ///b/2441", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.72],O2'(hydroxyl)-O2(carbonyl)[3.34]" } }, { "index": 50, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/684 vs ///b/777,///b/785", "A_nt1": { "desc": "///b/684 vs ///b/777", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.02],N1-N2(amino)[3.11]" }, "A_nt2": { "desc": "///b/684 vs ///b/785", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 51, "type": "X", "desc_short": "A vs U-A (WC)", "desc_long": "///b/748 vs ///b/743,///b/752", "A_nt1": { "desc": "///b/748 vs ///b/743", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/748 vs ///b/752", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.31],N1-O2'(hydroxyl)[2.88]" } }, { "index": 52, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/780 vs ///b/1775,///b/1787", "A_nt1": { "desc": "///b/780 vs ///b/1775", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.85],N3-N2(amino)[3.01]" }, "A_nt2": { "desc": "///b/780 vs ///b/1787", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.84],O2'(hydroxyl)-O2(carbonyl)[2.73]" } }, { "index": 53, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/791 vs ///b/2071,///b/2436", "A_nt1": { "desc": "///b/791 vs ///b/2071", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.62]" }, "A_nt2": { "desc": "///b/791 vs ///b/2436", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 54, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/818 vs ///b/836,///b/941", "A_nt1": { "desc": "///b/818 vs ///b/836", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.80]" }, "A_nt2": { "desc": "///b/818 vs ///b/941", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.35]" } }, { "index": 55, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/909 vs ///b/2263,///b/2275", "A_nt1": { "desc": "///b/909 vs ///b/2263", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.49]" }, "A_nt2": { "desc": "///b/909 vs ///b/2275", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 56, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/910 vs ///b/2262,///b/2276", "A_nt1": { "desc": "///b/910 vs ///b/2262", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.15]" }, "A_nt2": { "desc": "///b/910 vs ///b/2276", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.69],N3-N2(amino)[3.07]" } }, { "index": 57, "type": "II", "desc_short": "A vs U-G (Wobble)", "desc_long": "///b/958 vs ///b/2456,///b/2493", "A_nt1": { "desc": "///b/958 vs ///b/2456", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O3'[2.90],O2'(hydroxyl)-O2'(hydroxyl)[2.99],N3-O2'(hydroxyl)[2.86]" }, "A_nt2": { "desc": "///b/958 vs ///b/2493", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 58, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/959 vs ///b/2455,///b/2494", "A_nt1": { "desc": "///b/959 vs ///b/2455", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.05]" }, "A_nt2": { "desc": "///b/959 vs ///b/2494", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.04],N3-N2(amino)[3.10]" } }, { "index": 59, "type": "II", "desc_short": "A vs U-A (WC)", "desc_long": "///b/979 vs ///b/2025,///b/2036", "A_nt1": { "desc": "///b/979 vs ///b/2025", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/979 vs ///b/2036", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.98],N3-O2'(hydroxyl)[2.62]" } }, { "index": 60, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/980 vs ///b/2026,///b/2035", "A_nt1": { "desc": "///b/980 vs ///b/2026", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.78],N3-N2(amino)[3.11]" }, "A_nt2": { "desc": "///b/980 vs ///b/2035", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.85]" } }, { "index": 61, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///b/982 vs ///b/945,///b/970", "A_nt1": { "desc": "///b/982 vs ///b/945", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/982 vs ///b/970", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.81],N3-O2'(hydroxyl)[2.76]" } }, { "index": 62, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/999 vs ///b/975,///b/986", "A_nt1": { "desc": "///b/999 vs ///b/975", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/999 vs ///b/986", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.70],N3-O2'(hydroxyl)[2.82]" } }, { "index": 63, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1000 vs ///b/976,///b/985", "A_nt1": { "desc": "///b/1000 vs ///b/976", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.96],N3-N2(amino)[3.37]" }, "A_nt2": { "desc": "///b/1000 vs ///b/985", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.02]" } }, { "index": 64, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1008 vs ///b/1001,///b/1152", "A_nt1": { "desc": "///b/1008 vs ///b/1001", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1008 vs ///b/1152", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.17],N3-O2'(hydroxyl)[2.50]" } }, { "index": 65, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1009 vs ///b/1002,///b/1151", "A_nt1": { "desc": "///b/1009 vs ///b/1002", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.58],N3-N2(amino)[3.03]" }, "A_nt2": { "desc": "///b/1009 vs ///b/1151", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.96],O2'(hydroxyl)-O2(carbonyl)[2.91]" } }, { "index": 66, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1027 vs ///b/2463,///b/2485", "A_nt1": { "desc": "///b/1027 vs ///b/2463", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1027 vs ///b/2485", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.16],N3-O2'(hydroxyl)[2.41]" } }, { "index": 67, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1028 vs ///b/2464,///b/2484", "A_nt1": { "desc": "///b/1028 vs ///b/2464", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.78]" }, "A_nt2": { "desc": "///b/1028 vs ///b/2484", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 68, "type": "X", "desc_short": "A vs U-U (--)", "desc_long": "///b/1069 vs ///b/1060,///b/1096", "A_nt1": { "desc": "///b/1069 vs ///b/1060", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1069 vs ///b/1096", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.56],N1-O2'(hydroxyl)[2.75]" } }, { "index": 69, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1126 vs ///b/2461,///b/2487", "A_nt1": { "desc": "///b/1126 vs ///b/2461", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1126 vs ///b/2487", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N7-O2'(hydroxyl)[2.82],N6(amino)-N3[3.03]" } }, { "index": 70, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1126 vs ///b/2462,///b/2486", "A_nt1": { "desc": "///b/1126 vs ///b/2462", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.23],N1-O2'(hydroxyl)[2.78]" }, "A_nt2": { "desc": "///b/1126 vs ///b/2486", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 71, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1128 vs ///b/2514,///b/2568", "A_nt1": { "desc": "///b/1128 vs ///b/2514", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.67],O2'(hydroxyl)-O2(carbonyl)[2.70]" }, "A_nt2": { "desc": "///b/1128 vs ///b/2568", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.65],N3-N2(amino)[3.10]" } }, { "index": 72, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1132 vs ///b/2024,///b/2037", "A_nt1": { "desc": "///b/1132 vs ///b/2024", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.29]" }, "A_nt2": { "desc": "///b/1132 vs ///b/2037", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.47]" } }, { "index": 73, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1213 vs ///b/30,///b/510", "A_nt1": { "desc": "///b/1213 vs ///b/30", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.96],N3-O2'(hydroxyl)[2.75]" }, "A_nt2": { "desc": "///b/1213 vs ///b/510", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 74, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1225 vs ///b/811,///b/1194", "A_nt1": { "desc": "///b/1225 vs ///b/811", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.89],O2'(hydroxyl)-O2(carbonyl)[3.13]" }, "A_nt2": { "desc": "///b/1225 vs ///b/1194", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.84],N3-N2(amino)[3.16]" } }, { "index": 75, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1252 vs ///b/563,///b/576", "A_nt1": { "desc": "///b/1252 vs ///b/563", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.93]" }, "A_nt2": { "desc": "///b/1252 vs ///b/576", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 76, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1253 vs ///b/671,///b/807", "A_nt1": { "desc": "///b/1253 vs ///b/671", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1253 vs ///b/807", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.82],N3-N2(amino)[3.38]" } }, { "index": 77, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1273 vs ///b/1295,///b/1643", "A_nt1": { "desc": "///b/1273 vs ///b/1295", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1273 vs ///b/1643", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.80]" } }, { "index": 78, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1274 vs ///b/1294,///b/1644", "A_nt1": { "desc": "///b/1274 vs ///b/1294", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.61]" }, "A_nt2": { "desc": "///b/1274 vs ///b/1644", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-N2(amino)[2.93],O2'(hydroxyl)-N3[2.86]" } }, { "index": 79, "type": "X", "desc_short": "A vs U-A (WC)", "desc_long": "///b/1286 vs ///b/1647,///b/2008", "A_nt1": { "desc": "///b/1286 vs ///b/1647", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.77]" }, "A_nt2": { "desc": "///b/1286 vs ///b/2008", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 80, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1301 vs ///b/1296,///b/1642", "A_nt1": { "desc": "///b/1301 vs ///b/1296", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.08],N1-O2'(hydroxyl)[2.73]" }, "A_nt2": { "desc": "///b/1301 vs ///b/1642", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 81, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1321 vs ///b/1318,///b/1332", "A_nt1": { "desc": "///b/1321 vs ///b/1318", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1321 vs ///b/1332", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-N3[3.12],N1-O2'(hydroxyl)[2.60]" } }, { "index": 82, "type": "II", "desc_short": "A vs A-U (WC)", "desc_long": "///b/1352 vs ///b/692,///b/768", "A_nt1": { "desc": "///b/1352 vs ///b/692", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.03],N3-O2'(hydroxyl)[2.63]" }, "A_nt2": { "desc": "///b/1352 vs ///b/768", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 83, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1353 vs ///b/691,///b/769", "A_nt1": { "desc": "///b/1353 vs ///b/691", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.84],O2'(hydroxyl)-O2(carbonyl)[3.08]" }, "A_nt2": { "desc": "///b/1353 vs ///b/769", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N3-N2(amino)[3.45]" } }, { "index": 84, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1364 vs ///b/187,///b/209", "A_nt1": { "desc": "///b/1364 vs ///b/187", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N1-N2(amino)[3.03],N3-O2'(hydroxyl)[2.91]" }, "A_nt2": { "desc": "///b/1364 vs ///b/209", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 85, "type": "II", "desc_short": "A vs U-A (WC)", "desc_long": "///b/1382 vs ///b/1404,///b/1596", "A_nt1": { "desc": "///b/1382 vs ///b/1404", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.15],N3-O2'(hydroxyl)[2.90]" }, "A_nt2": { "desc": "///b/1382 vs ///b/1596", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 86, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1383 vs ///b/1342,///b/1403", "A_nt1": { "desc": "///b/1383 vs ///b/1342", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.81],N3-N2(amino)[3.17]" }, "A_nt2": { "desc": "///b/1383 vs ///b/1403", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.92],O2'(hydroxyl)-O2(carbonyl)[2.91]" } }, { "index": 87, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1391 vs ///b/1314,///b/1336", "A_nt1": { "desc": "///b/1391 vs ///b/1314", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.11],N3-O2'(hydroxyl)[2.69]" }, "A_nt2": { "desc": "///b/1391 vs ///b/1336", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 88, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1392 vs ///b/1313,///b/1337", "A_nt1": { "desc": "///b/1392 vs ///b/1313", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1392 vs ///b/1337", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.49],N3-N2(amino)[3.43]" } }, { "index": 89, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1468 vs ///b/1385,///b/1400", "A_nt1": { "desc": "///b/1468 vs ///b/1385", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.95],N3-O2'(hydroxyl)[2.87]" }, "A_nt2": { "desc": "///b/1468 vs ///b/1400", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.55]" } }, { "index": 90, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///b/1469 vs ///b/1384,///b/1401", "A_nt1": { "desc": "///b/1469 vs ///b/1384", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1469 vs ///b/1401", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.98]" } }, { "index": 91, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1476 vs ///b/1434,///b/1556", "A_nt1": { "desc": "///b/1476 vs ///b/1434", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1476 vs ///b/1556", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.89]" } }, { "index": 92, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1493 vs ///b/1420,///b/1576", "A_nt1": { "desc": "///b/1493 vs ///b/1420", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[2.91]" }, "A_nt2": { "desc": "///b/1493 vs ///b/1576", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 93, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1494 vs ///b/1420,///b/1576", "A_nt1": { "desc": "///b/1494 vs ///b/1420", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[2.70]" }, "A_nt2": { "desc": "///b/1494 vs ///b/1576", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 94, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1495 vs ///b/1420,///b/1576", "A_nt1": { "desc": "///b/1495 vs ///b/1420", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1495 vs ///b/1576", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.07],N3-O2'(hydroxyl)[2.84]" } }, { "index": 95, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1514 vs ///b/1435,///b/1555", "A_nt1": { "desc": "///b/1514 vs ///b/1435", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.93],N3-N2(amino)[3.14]" }, "A_nt2": { "desc": "///b/1514 vs ///b/1555", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.70],O2'(hydroxyl)-O2(carbonyl)[3.16]" } }, { "index": 96, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1543 vs ///b/1446,///b/1463", "A_nt1": { "desc": "///b/1543 vs ///b/1446", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.88],N3-O2'(hydroxyl)[2.52]" }, "A_nt2": { "desc": "///b/1543 vs ///b/1463", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 97, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1544 vs ///b/1445,///b/1464", "A_nt1": { "desc": "///b/1544 vs ///b/1445", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2(carbonyl)[3.20]" }, "A_nt2": { "desc": "///b/1544 vs ///b/1464", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.95],N3-N2(amino)[3.06]" } }, { "index": 98, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1569 vs ///b/1350,///b/1379", "A_nt1": { "desc": "///b/1569 vs ///b/1350", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1569 vs ///b/1379", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.00]" } }, { "index": 99, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1570 vs ///b/1350,///b/1379", "A_nt1": { "desc": "///b/1570 vs ///b/1350", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O3'[2.86],O2'(hydroxyl)-O2'(hydroxyl)[2.63],N3-O2'(hydroxyl)[2.89]" }, "A_nt2": { "desc": "///b/1570 vs ///b/1379", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 100, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1571 vs ///b/1349,///b/1380", "A_nt1": { "desc": "///b/1571 vs ///b/1349", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.46]" }, "A_nt2": { "desc": "///b/1571 vs ///b/1380", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.13],N3-N2(amino)[3.17]" } }, { "index": 101, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1585 vs ///b/1415,///b/1581", "A_nt1": { "desc": "///b/1585 vs ///b/1415", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.22]" }, "A_nt2": { "desc": "///b/1585 vs ///b/1581", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 102, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1615 vs ///b/1323,///b/1329", "A_nt1": { "desc": "///b/1615 vs ///b/1323", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-N3[3.18]" }, "A_nt2": { "desc": "///b/1615 vs ///b/1329", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 103, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1631 vs ///b/699,///b/731", "A_nt1": { "desc": "///b/1631 vs ///b/699", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O3'[3.14],O2'(hydroxyl)-O2'(hydroxyl)[2.79],N3-O2'(hydroxyl)[2.59]" }, "A_nt2": { "desc": "///b/1631 vs ///b/731", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 104, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1677 vs ///b/1673,///b/1989", "A_nt1": { "desc": "///b/1677 vs ///b/1673", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1677 vs ///b/1989", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.02],N3-O2'(hydroxyl)[2.93]" } }, { "index": 105, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1753 vs ///b/2692,///b/2715", "A_nt1": { "desc": "///b/1753 vs ///b/2692", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1753 vs ///b/2715", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.17],N1-O2'(hydroxyl)[2.48]" } }, { "index": 106, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1754 vs ///b/2693,///b/2714", "A_nt1": { "desc": "///b/1754 vs ///b/2693", "face_type": "+", "hbonds_num": 3, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[2.90],N6(amino)-N3[3.14],N1-N2(amino)[3.04]" }, "A_nt2": { "desc": "///b/1754 vs ///b/2714", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 107, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1784 vs ///b/2587,///b/2605", "A_nt1": { "desc": "///b/1784 vs ///b/2587", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.98]" }, "A_nt2": { "desc": "///b/1784 vs ///b/2605", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 108, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1801 vs ///b/1796,///b/1821", "A_nt1": { "desc": "///b/1801 vs ///b/1796", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1801 vs ///b/1821", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.52]" } }, { "index": 109, "type": "X", "desc_short": "A vs U-A (WC)", "desc_long": "///b/1801 vs ///b/1797,///b/1820", "A_nt1": { "desc": "///b/1801 vs ///b/1797", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O3'[3.02],O2'(hydroxyl)-O2'(hydroxyl)[2.53],N3-O2'(hydroxyl)[2.95]" }, "A_nt2": { "desc": "///b/1801 vs ///b/1820", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 110, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1802 vs ///b/1796,///b/1821", "A_nt1": { "desc": "///b/1802 vs ///b/1796", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.37],N3-N2(amino)[3.44]" }, "A_nt2": { "desc": "///b/1802 vs ///b/1821", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.02]" } }, { "index": 111, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1808 vs ///b/1362,///b/1367", "A_nt1": { "desc": "///b/1808 vs ///b/1362", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.81],N3-O2'(hydroxyl)[2.50]" }, "A_nt2": { "desc": "///b/1808 vs ///b/1367", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 112, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1809 vs ///b/1361,///b/1368", "A_nt1": { "desc": "///b/1809 vs ///b/1361", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.96]" }, "A_nt2": { "desc": "///b/1809 vs ///b/1368", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.46],N3-N2(amino)[3.32]" } }, { "index": 113, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1847 vs ///b/1845,///b/1893", "A_nt1": { "desc": "///b/1847 vs ///b/1845", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1847 vs ///b/1893", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2(carbonyl)[2.97]" } }, { "index": 114, "type": "X", "desc_short": "A vs U-U (--)", "desc_long": "///b/1852 vs ///b/2085,///b/2232", "A_nt1": { "desc": "///b/1852 vs ///b/2085", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1852 vs ///b/2232", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O3'[3.10],O2'(hydroxyl)-O2'(hydroxyl)[2.99],N3-O2'(hydroxyl)[2.86]" } }, { "index": 115, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1852 vs ///b/2086,///b/2231", "A_nt1": { "desc": "///b/1852 vs ///b/2086", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.59]" }, "A_nt2": { "desc": "///b/1852 vs ///b/2231", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 116, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1853 vs ///b/2086,///b/2231", "A_nt1": { "desc": "///b/1853 vs ///b/2086", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.79],N3-N2(amino)[3.03]" }, "A_nt2": { "desc": "///b/1853 vs ///b/2231", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.86]" } }, { "index": 117, "type": "X", "desc_short": "A vs U-U (--)", "desc_long": "///b/1888 vs ///b/2085,///b/2232", "A_nt1": { "desc": "///b/1888 vs ///b/2085", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.70],N3-O2'(hydroxyl)[2.86]" }, "A_nt2": { "desc": "///b/1888 vs ///b/2232", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 118, "type": "I", "desc_short": "A vs U-G (Wobble)", "desc_long": "///b/1889 vs ///b/2084,///b/2233", "A_nt1": { "desc": "///b/1889 vs ///b/2084", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1889 vs ///b/2233", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.13],N3-N2(amino)[3.22]" } }, { "index": 119, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1899 vs ///b/1792,///b/1825", "A_nt1": { "desc": "///b/1899 vs ///b/1792", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.76]" }, "A_nt2": { "desc": "///b/1899 vs ///b/1825", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 120, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1926 vs ///b/1836,///b/1902", "A_nt1": { "desc": "///b/1926 vs ///b/1836", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O3'[3.11],O2'(hydroxyl)-O2'(hydroxyl)[2.82],N3-O2'(hydroxyl)[2.66]" }, "A_nt2": { "desc": "///b/1926 vs ///b/1902", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 121, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1927 vs ///b/1835,///b/1903", "A_nt1": { "desc": "///b/1927 vs ///b/1835", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.55]" }, "A_nt2": { "desc": "///b/1927 vs ///b/1903", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.50],N3-N2(amino)[3.25]" } }, { "index": 122, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1936 vs ///b/1933,///b/1963", "A_nt1": { "desc": "///b/1936 vs ///b/1933", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1936 vs ///b/1963", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.08]" } }, { "index": 123, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///b/1937 vs ///b/2588,///b/2604", "A_nt1": { "desc": "///b/1937 vs ///b/2588", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1937 vs ///b/2604", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[3.03]" } }, { "index": 124, "type": "I", "desc_short": "A vs U-C (--)", "desc_long": "///b/1952 vs ///b/2548,///b/2558", "A_nt1": { "desc": "///b/1952 vs ///b/2548", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.90]" }, "A_nt2": { "desc": "///b/1952 vs ///b/2558", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O3'-O2'(hydroxyl)[3.20],O2'(hydroxyl)-O2'(hydroxyl)[2.72],O2'(hydroxyl)-O2(carbonyl)[2.75]" } }, { "index": 125, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1965 vs ///b/2591,///b/2600", "A_nt1": { "desc": "///b/1965 vs ///b/2591", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.78]" }, "A_nt2": { "desc": "///b/1965 vs ///b/2600", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 126, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1968 vs ///b/1832,///b/1971", "A_nt1": { "desc": "///b/1968 vs ///b/1832", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.80]" }, "A_nt2": { "desc": "///b/1968 vs ///b/1971", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.74],O2'(hydroxyl)-N3[2.82],N3-N2(amino)[3.29]" } }, { "index": 127, "type": "X", "desc_short": "A vs G-U (Wobble)", "desc_long": "///b/1969 vs ///b/1791,///b/1826", "A_nt1": { "desc": "///b/1969 vs ///b/1791", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1969 vs ///b/1826", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O4'[3.36],N3-O2'(hydroxyl)[2.73]" } }, { "index": 128, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/1969 vs ///b/1792,///b/1825", "A_nt1": { "desc": "///b/1969 vs ///b/1792", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/1969 vs ///b/1825", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-N2(amino)[3.55]" } }, { "index": 129, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/1980 vs ///b/737,///b/757", "A_nt1": { "desc": "///b/1980 vs ///b/737", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.03]" }, "A_nt2": { "desc": "///b/1980 vs ///b/757", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.84]" } }, { "index": 130, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/2030 vs ///b/2454,///b/2495", "A_nt1": { "desc": "///b/2030 vs ///b/2454", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N3-O2'(hydroxyl)[2.68]" }, "A_nt2": { "desc": "///b/2030 vs ///b/2495", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 131, "type": "X", "desc_short": "A vs G-A (Imino)", "desc_long": "///b/2061 vs ///b/2060,///b/2450", "A_nt1": { "desc": "///b/2061 vs ///b/2060", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[2.64]" }, "A_nt2": { "desc": "///b/2061 vs ///b/2450", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 132, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/2266 vs ///b/951,///b/964", "A_nt1": { "desc": "///b/2266 vs ///b/951", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.14]" }, "A_nt2": { "desc": "///b/2266 vs ///b/964", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 133, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/2272 vs ///b/952,///b/963", "A_nt1": { "desc": "///b/2272 vs ///b/952", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-N2(amino)[3.30]" }, "A_nt2": { "desc": "///b/2272 vs ///b/963", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O3'[3.19],O2'(hydroxyl)-O2'(hydroxyl)[3.01],N3-O2'(hydroxyl)[2.56]" } }, { "index": 134, "type": "X", "desc_short": "A vs G-U (Wobble)", "desc_long": "///b/2273 vs ///b/953,///b/962", "A_nt1": { "desc": "///b/2273 vs ///b/953", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.61],N3-N2(amino)[3.50]" }, "A_nt2": { "desc": "///b/2273 vs ///b/962", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 135, "type": "X", "desc_short": "A vs A-U (WC)", "desc_long": "///b/2287 vs ///b/2283,///b/2383", "A_nt1": { "desc": "///b/2287 vs ///b/2283", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2'(hydroxyl)[3.20],N1-O2'(hydroxyl)[2.89]" }, "A_nt2": { "desc": "///b/2287 vs ///b/2383", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 136, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/2326 vs ///b/2260,///b/2278", "A_nt1": { "desc": "///b/2326 vs ///b/2260", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.03]" }, "A_nt2": { "desc": "///b/2326 vs ///b/2278", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.94],N3-N2(amino)[3.32]" } }, { "index": 137, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/2387 vs ///b/2259,///b/2279", "A_nt1": { "desc": "///b/2387 vs ///b/2259", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.91],O2'(hydroxyl)-O2(carbonyl)[3.36]" }, "A_nt2": { "desc": "///b/2387 vs ///b/2279", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.69],N3-N2(amino)[3.14]" } }, { "index": 138, "type": "I", "desc_short": "A vs A-U (WC)", "desc_long": "///b/2433 vs ///b/2076,///b/2242", "A_nt1": { "desc": "///b/2433 vs ///b/2076", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.74],O2'(hydroxyl)-N3[3.28]" }, "A_nt2": { "desc": "///b/2433 vs ///b/2242", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[3.04]" } }, { "index": 139, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/2530 vs ///b/2657,///b/2662", "A_nt1": { "desc": "///b/2530 vs ///b/2657", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.91],N3-O2'(hydroxyl)[2.77]" }, "A_nt2": { "desc": "///b/2530 vs ///b/2662", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 140, "type": "II", "desc_short": "A vs C-G (WC)", "desc_long": "///b/2563 vs ///b/2520,///b/2543", "A_nt1": { "desc": "///b/2563 vs ///b/2520", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[3.04],N3-O2'(hydroxyl)[2.68]" }, "A_nt2": { "desc": "///b/2563 vs ///b/2543", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 141, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/2564 vs ///b/2519,///b/2544", "A_nt1": { "desc": "///b/2564 vs ///b/2519", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.72]" }, "A_nt2": { "desc": "///b/2564 vs ///b/2544", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.75],N3-N2(amino)[3.03]" } }, { "index": 142, "type": "X", "desc_short": "A vs C-U (--)", "desc_long": "///b/2571 vs ///b/2451,///b/2503", "A_nt1": { "desc": "///b/2571 vs ///b/2451", "face_type": "-", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/2571 vs ///b/2503", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.83]" } }, { "index": 143, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/2597 vs ///b/2072,///b/2435", "A_nt1": { "desc": "///b/2597 vs ///b/2072", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.97]" }, "A_nt2": { "desc": "///b/2597 vs ///b/2435", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.61],N3-N2(amino)[3.23]" } }, { "index": 144, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/2739 vs ///b/2522,///b/2539", "A_nt1": { "desc": "///b/2739 vs ///b/2522", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/2739 vs ///b/2539", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.85],N3-O2'(hydroxyl)[2.65]" } }, { "index": 145, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/2740 vs ///b/2523,///b/2538", "A_nt1": { "desc": "///b/2740 vs ///b/2523", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.13],N3-N2(amino)[3.35]" }, "A_nt2": { "desc": "///b/2740 vs ///b/2538", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.85],O2'(hydroxyl)-O2(carbonyl)[3.18]" } }, { "index": 146, "type": "X", "desc_short": "A vs G-C (WC)", "desc_long": "///b/2763 vs ///b/2522,///b/2539", "A_nt1": { "desc": "///b/2763 vs ///b/2522", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.60],N3-N2(amino)[3.51]" }, "A_nt2": { "desc": "///b/2763 vs ///b/2539", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" } }, { "index": 147, "type": "II", "desc_short": "A vs G-C (WC)", "desc_long": "///b/2808 vs ///b/2629,///b/2787", "A_nt1": { "desc": "///b/2808 vs ///b/2629", "face_type": "+", "hbonds_num": 0, "hbonds_desc": "" }, "A_nt2": { "desc": "///b/2808 vs ///b/2787", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O3'[3.16],O2'(hydroxyl)-O2'(hydroxyl)[2.80],N3-O2'(hydroxyl)[2.57]" } }, { "index": 148, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/2809 vs ///b/2630,///b/2786", "A_nt1": { "desc": "///b/2809 vs ///b/2630", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[3.00],N3-N2(amino)[3.25]" }, "A_nt2": { "desc": "///b/2809 vs ///b/2786", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.98]" } }, { "index": 149, "type": "X", "desc_short": "A vs C-G (WC)", "desc_long": "///b/2822 vs ///b/2046,///b/2620", "A_nt1": { "desc": "///b/2822 vs ///b/2046", "face_type": "-", "hbonds_num": 2, "hbonds_desc": "N6(amino)-O2(carbonyl)[3.09],N1-O2'(hydroxyl)[2.64]" }, "A_nt2": { "desc": "///b/2822 vs ///b/2620", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N6(amino)*N2(amino)[3.43]" } }, { "index": 150, "type": "I", "desc_short": "A vs C-G (WC)", "desc_long": "///b/2859 vs ///b/1707,///b/1749", "A_nt1": { "desc": "///b/2859 vs ///b/1707", "face_type": "-", "hbonds_num": 1, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.97]" }, "A_nt2": { "desc": "///b/2859 vs ///b/1749", "face_type": "+", "hbonds_num": 2, "hbonds_desc": "N1-O2'(hydroxyl)[2.69],N3-N2(amino)[3.12]" } }, { "index": 151, "type": "I", "desc_short": "A vs G-C (WC)", "desc_long": "///b/2882 vs ///b/2815,///b/2829", "A_nt1": { "desc": "///b/2882 vs ///b/2815", "face_type": "-", "hbonds_num": 3, "hbonds_desc": "O2'(hydroxyl)-O2'(hydroxyl)[2.86],O2'(hydroxyl)-N3[2.61],N3-N2(amino)[2.98]" }, "A_nt2": { "desc": "///b/2882 vs ///b/2829", "face_type": "+", "hbonds_num": 1, "hbonds_desc": "N1-O2'(hydroxyl)[2.76]" } } ], "num_riboseZippers": 38, "riboseZippers": [ { "index": 1, "num_nts": 4, "nts_short": "AGAG", "nts_long": "///a/78,///a/79,///b/860,///b/861" }, { "index": 2, "num_nts": 4, "nts_short": "UGAG", "nts_long": "///b/29,///b/30,///b/1213,///b/1214" }, { "index": 3, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///b/115,///b/116,///b/126,///b/127" }, { "index": 4, "num_nts": 4, "nts_short": "AACC", "nts_long": "///b/160,///b/161,///b/2206,///b/2207" }, { "index": 5, "num_nts": 4, "nts_short": "ACAC", "nts_long": "///b/182,///b/183,///b/432,///b/433" }, { "index": 6, "num_nts": 4, "nts_short": "AACC", "nts_long": "///b/190,///b/191,///b/677,///b/678" }, { "index": 7, "num_nts": 4, "nts_short": "AGAU", "nts_long": "///b/219,///b/220,///b/233,///b/234" }, { "index": 8, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///b/237,///b/238,///b/607,///b/608" }, { "index": 9, "num_nts": 4, "nts_short": "AGAA", "nts_long": "///b/262,///b/263,///b/429,///b/430" }, { "index": 10, "num_nts": 4, "nts_short": "AAUC", "nts_long": "///b/514,///b/515,///b/579,///b/580" }, { "index": 11, "num_nts": 4, "nts_short": "CAUG", "nts_long": "///b/527,///b/2777,///b/2778,///b/2779" }, { "index": 12, "num_nts": 4, "nts_short": "AACC", "nts_long": "///b/674,///b/675,///b/2441,///b/2442" }, { "index": 13, "num_nts": 4, "nts_short": "CAAA", "nts_long": "///b/691,///b/692,///b/1352,///b/1353" }, { "index": 14, "num_nts": 4, "nts_short": "AGAG", "nts_long": "///b/698,///b/699,///b/1631,///b/1632" }, { "index": 15, "num_nts": 4, "nts_short": "CUGA", "nts_long": "///b/811,///b/812,///b/1224,///b/1225" }, { "index": 16, "num_nts": 4, "nts_short": "GACC", "nts_long": "///b/817,///b/818,///b/836,///b/837" }, { "index": 17, "num_nts": 4, "nts_short": "AGAG", "nts_long": "///b/940,///b/941,///b/1188,///b/1189" }, { "index": 18, "num_nts": 4, "nts_short": "AACU", "nts_long": "///b/958,///b/959,///b/2455,///b/2456" }, { "index": 19, "num_nts": 4, "nts_short": "CCUA", "nts_long": "///b/963,///b/964,///b/2271,///b/2272" }, { "index": 20, "num_nts": 4, "nts_short": "AACA", "nts_long": "///b/979,///b/980,///b/2035,///b/2036" }, { "index": 21, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///b/985,///b/986,///b/999,///b/1000" }, { "index": 22, "num_nts": 4, "nts_short": "AACC", "nts_long": "///b/1008,///b/1009,///b/1151,///b/1152" }, { "index": 23, "num_nts": 6, "nts_short": "CCUAAA", "nts_long": "///b/1349,///b/1350,///b/1351,///b/1569,///b/1570,///b/1571" }, { "index": 24, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///b/1361,///b/1362,///b/1808,///b/1809" }, { "index": 25, "num_nts": 4, "nts_short": "AACU", "nts_long": "///b/1382,///b/1383,///b/1403,///b/1404" }, { "index": 26, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///b/1445,///b/1446,///b/1543,///b/1544" }, { "index": 27, "num_nts": 4, "nts_short": "GACC", "nts_long": "///b/1513,///b/1514,///b/1555,///b/1556" }, { "index": 28, "num_nts": 4, "nts_short": "CUGA", "nts_long": "///b/1707,///b/1708,///b/2858,///b/2859" }, { "index": 29, "num_nts": 4, "nts_short": "UAGG", "nts_long": "///b/1781,///b/1782,///b/2606,///b/2607" }, { "index": 30, "num_nts": 4, "nts_short": "GUAA", "nts_long": "///b/1796,///b/1797,///b/1801,///b/1802" }, { "index": 31, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///b/1835,///b/1836,///b/1926,///b/1927" }, { "index": 32, "num_nts": 4, "nts_short": "AACU", "nts_long": "///b/1852,///b/1853,///b/2231,///b/2232" }, { "index": 33, "num_nts": 4, "nts_short": "AACA", "nts_long": "///b/1951,///b/1952,///b/2558,///b/2559" }, { "index": 34, "num_nts": 4, "nts_short": "CUGA", "nts_long": "///b/2072,///b/2073,///b/2596,///b/2597" }, { "index": 35, "num_nts": 4, "nts_short": "ACAA", "nts_long": "///b/2076,///b/2077,///b/2432,///b/2433" }, { "index": 36, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///b/2519,///b/2520,///b/2563,///b/2564" }, { "index": 37, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///b/2538,///b/2539,///b/2739,///b/2740" }, { "index": 38, "num_nts": 4, "nts_short": "CCAA", "nts_long": "///b/2786,///b/2787,///b/2808,///b/2809" } ], "num_Kturns": 4, "Kturns": [ { "index": 1, "type": "Normal k-turn", "iloop_index": 58, "bounding_stems": [ 76, 77 ], "Cstem_index": 76, "NCstem_index": 77, "Cstem_pair": "C-G (///b/1207,///b/1237) WC", "NCstem_pair": "G-U (///b/1214,///b/1233) Wobble", "GA_pair": "G-A (///b/1211,///b/1236) Sheared", "bending_angle": 60.010, "strand1": { "num_nts": 17, "nts_short": "GCCUGCGAAGGUGUGCU", "nts_long": "///b/1205,///b/1206,///b/1207,///b/1208,///b/1209,///b/1210,///b/1211,///b/1212,///b/1213,///b/1214,///b/1215,///b/1216,///b/1217,///b/1218,///b/1219,///b/1220,///b/1221" }, "strand2": { "num_nts": 14, "nts_short": "GGCAUGCUGGAGGU", "nts_long": "///b/1226,///b/1227,///b/1228,///b/1229,///b/1230,///b/1231,///b/1232,///b/1233,///b/1234,///b/1235,///b/1236,///b/1237,///b/1238,///b/1239" } }, { "index": 2, "type": "Normal k-turn", "iloop_index": 64, "bounding_stems": [ -26, 73 ], "Cstem_index": -26, "NCstem_index": 73, "Cstem_pair": "C-G (///b/1042,///b/1111) WC", "NCstem_pair": "G-U (///b/1050,///b/1107) Wobble", "GA_pair": "G-A (///b/1046,///b/1110) Sheared", "bending_angle": 72.927, "strand1": { "num_nts": 10, "nts_short": "CCCAGACAGC", "nts_long": "///b/1042,///b/1043,///b/1044,///b/1045,///b/1046,///b/1047,///b/1048,///b/1049,///b/1050,///b/1051" }, "strand2": { "num_nts": 6, "nts_short": "GUCGAG", "nts_long": "///b/1106,///b/1107,///b/1108,///b/1109,///b/1110,///b/1111" } }, { "index": 3, "type": "Undecided case [A-G]", "iloop_index": 13, "bounding_stems": [ -35, 88 ], "Cstem_index": -35, "NCstem_index": 88, "Cstem_pair": "A-U (///b/1352,///b/1378) WC", "NCstem_pair": "G-C (///b/1354,///b/1375) WC", "GA_pair": "A-G (///b/1353,///b/1376) Sheared", "bending_angle": 44.075, "strand1": { "num_nts": 5, "nts_short": "AAGGC", "nts_long": "///b/1352,///b/1353,///b/1354,///b/1355,///b/1356" }, "strand2": { "num_nts": 6, "nts_short": "GUCGAU", "nts_long": "///b/1373,///b/1374,///b/1375,///b/1376,///b/1377,///b/1378" } }, { "index": 4, "type": "Undecided case", "iloop_index": 69, "bounding_stems": [ 118, 117 ], "Cstem_index": 118, "NCstem_index": 117, "Cstem_pair": "G-C (///b/1812,///b/1803) WC", "NCstem_pair": "A-U (///b/1820,///b/1797) WC", "GA_pair": "G-A (///b/1813,///b/1802) Sheared", "bending_angle": 76.344, "strand1": { "num_nts": 17, "nts_short": "GUGGACGUAUACGGUGU", "nts_long": "///b/1810,///b/1811,///b/1812,///b/1813,///b/1814,///b/1815,///b/1816,///b/1817,///b/1818,///b/1819,///b/1820,///b/1821,///b/1822,///b/1823,///b/1824,///b/1825,///b/1826" }, "strand2": { "num_nts": 15, "nts_short": "GCACUGUGCAAACAC", "nts_long": "///b/1791,///b/1792,///b/1793,///b/1794,///b/1795,///b/1796,///b/1797,///b/1798,///b/1799,///b/1800,///b/1801,///b/1802,///b/1803,///b/1804,///b/1805" } } ], "num_splayUnits": 279, "splayUnits": [ { "index": 1, "num_nts": 3, "nts_short": "CGU", "nts_long": "///a/12,///a/13,///a/14" }, { "index": 2, "num_nts": 2, "nts_short": "AG", "nts_long": "///a/15,///a/16" }, { "index": 3, "num_nts": 3, "nts_short": "UGC", "nts_long": "///a/40,///a/41,///a/42" }, { "index": 4, "num_nts": 2, "nts_short": "CG", "nts_long": "///a/43,///a/44" }, { "index": 5, "num_nts": 2, "nts_short": "CU", "nts_long": 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"///b/124,///b/125,///b/126" }, { "index": 18, "num_nts": 2, "nts_short": "AC", "nts_long": "///b/127,///b/128" }, { "index": 19, "num_nts": 3, "nts_short": "UUC", "nts_long": "///b/138,///b/139,///b/140" }, { "index": 20, "num_nts": 2, "nts_short": "UA", "nts_long": "///b/148,///b/149" }, { "index": 21, "num_nts": 3, "nts_short": "AAA", "nts_long": "///b/195,///b/196,///b/197" }, { "index": 22, "num_nts": 2, "nts_short": "AU", "nts_long": "///b/199,///b/200" }, { "index": 23, "num_nts": 3, "nts_short": "AAU", "nts_long": "///b/222,///b/223,///b/224" }, { "index": 24, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/232,///b/233" }, { "index": 25, "num_nts": 4, "nts_short": "GGCG", "nts_long": "///b/247,///b/248,///b/249,///b/250" }, { "index": 26, "num_nts": 2, "nts_short": "CA", "nts_long": "///b/264,///b/265" }, { "index": 27, "num_nts": 2, "nts_short": "UG", "nts_long": "///b/276,///b/277" }, { "index": 28, "num_nts": 2, "nts_short": "AG", "nts_long": "///b/300,///b/301" }, { "index": 29, "num_nts": 2, "nts_short": "AG", "nts_long": "///b/311,///b/312" }, { "index": 30, "num_nts": 2, "nts_short": "AU", "nts_long": "///b/320,///b/321" }, { "index": 31, "num_nts": 2, "nts_short": "CA", "nts_long": "///b/323,///b/324" }, { "index": 32, "num_nts": 2, "nts_short": "UG", "nts_long": "///b/328,///b/329" }, { "index": 33, "num_nts": 3, "nts_short": "CAG", "nts_long": "///b/331,///b/332,///b/333" }, { "index": 34, "num_nts": 2, "nts_short": "CC", "nts_long": "///b/334,///b/335" }, { "index": 35, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/370,///b/371" }, { "index": 36, "num_nts": 3, "nts_short": "CGU", "nts_long": "///b/385,///b/386,///b/387" }, { "index": 37, "num_nts": 4, "nts_short": "UAUG", "nts_long": "///b/403,///b/404,///b/405,///b/406" }, { "index": 38, "num_nts": 3, "nts_short": "GGA", "nts_long": "///b/410,///b/411,///b/412" }, { "index": 39, "num_nts": 2, "nts_short": "AG", "nts_long": "///b/423,///b/424" }, { "index": 40, "num_nts": 3, "nts_short": "GAC", "nts_long": "///b/442,///b/443,///b/444" }, { "index": 41, "num_nts": 3, "nts_short": "AUA", "nts_long": "///b/447,///b/448,///b/449" }, { "index": 42, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/453,///b/454" }, { "index": 43, "num_nts": 3, "nts_short": "CCA", "nts_long": "///b/455,///b/456,///b/457" }, { "index": 44, "num_nts": 2, "nts_short": "AG", "nts_long": "///b/472,///b/473" }, { "index": 45, "num_nts": 2, "nts_short": "GC", "nts_long": "///b/474,///b/475" }, { "index": 46, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/482,///b/483" }, { "index": 47, "num_nts": 3, "nts_short": "GCG", "nts_long": "///b/489,///b/490,///b/491" }, { "index": 48, "num_nts": 3, "nts_short": "AAA", "nts_long": "///b/503,///b/504,///b/505" }, { "index": 49, "num_nts": 4, "nts_short": "AACC", "nts_long": "///b/507,///b/508,///b/509,///b/510" }, { "index": 50, "num_nts": 2, "nts_short": "AC", "nts_long": "///b/526,///b/527" }, { "index": 51, "num_nts": 2, "nts_short": "GC", "nts_long": "///b/530,///b/531" }, { "index": 52, "num_nts": 3, "nts_short": "GUA", "nts_long": "///b/560,///b/561,///b/562" }, { "index": 53, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/573,///b/574" }, { "index": 54, "num_nts": 2, "nts_short": "GG", "nts_long": "///b/577,///b/578" }, { "index": 55, "num_nts": 2, "nts_short": "GA", "nts_long": "///b/611,///b/612" }, { "index": 56, "num_nts": 3, "nts_short": "AUA", "nts_long": "///b/613,///b/614,///b/615" }, { "index": 57, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/625,///b/626" }, { "index": 58, "num_nts": 3, "nts_short": "ACU", "nts_long": "///b/643,///b/644,///b/645" }, { "index": 59, "num_nts": 4, "nts_short": "UUAA", "nts_long": "///b/651,///b/652,///b/653,///b/654" }, { "index": 60, "num_nts": 2, "nts_short": "AC", "nts_long": "///b/669,///b/670" }, { "index": 61, "num_nts": 3, "nts_short": "AUC", "nts_long": "///b/684,///b/685,///b/686" }, { "index": 62, "num_nts": 2, "nts_short": "CA", "nts_long": "///b/697,///b/698" }, { "index": 63, "num_nts": 3, "nts_short": "GGA", "nts_long": "///b/727,///b/728,///b/729" }, { "index": 64, "num_nts": 3, "nts_short": "UUG", "nts_long": "///b/745,///b/746,///b/747" }, { "index": 65, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/749,///b/750" }, { "index": 66, "num_nts": 2, "nts_short": "AA", "nts_long": "///b/751,///b/752" }, { "index": 67, "num_nts": 2, "nts_short": "AU", "nts_long": "///b/760,///b/761" }, { "index": 68, "num_nts": 3, "nts_short": "GAC", "nts_long": "///b/762,///b/763,///b/764" }, { "index": 69, "num_nts": 2, "nts_short": "GG", "nts_long": "///b/774,///b/775" }, { "index": 70, "num_nts": 3, "nts_short": "GAA", "nts_long": "///b/779,///b/780,///b/781" }, { "index": 71, "num_nts": 2, "nts_short": "AG", "nts_long": "///b/782,///b/783" }, { "index": 72, "num_nts": 4, "nts_short": "CAAU", "nts_long": "///b/786,///b/787,///b/788,///b/789" }, { "index": 73, "num_nts": 2, "nts_short": "CA", "nts_long": "///b/790,///b/791" }, { 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